Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 305914 L11766 gag 0 1459 963 AD A 09_cpx A (Highly confident Major) 401751 L14570 env 0 2424 1574 01B B 15_01B B (Highly confident Major) 2632137 Y13196 gag 0 1402 963 AGH A 04_cpx A (Highly confident Major) 2944148 U92049 gag 0 1488 963 A1C A 03_AB A (Highly confident Major) 4071207 AF038120 env 1 660 350 CD D 10_CD D (Highly confident Major) 4539033 AJ237565 gag 805 2302 963 A1DHK A 03_AB A (Highly confident Major) 4539043 AJ237566 gag 766 1378 385 A1DHK A 03_AB A (Highly confident Major) 5668910 AF076474 gag 158 1652 963 A1GHU A 03_AB A (Highly confident Major) 6624658 AJ269994 gag 0 622 572 A1G A 03_AB A (Highly confident Major) 6643025 AF192135 gag 185 1679 963 A1GJ A 03_AB A (Highly confident Major) 8037719 AF229203 env 0 388 318 AO A 02_AG A (Highly confident Major) 9929176 AJ298624 gag 0 498 426 AJ A 06_cpx A (Highly confident Major) 9931089 AJ293865 gag 144 1632 963 06A1 A 09_cpx A (Highly confident Major) 11125554 AJ404257 gag 0 623 573 U A 03_AB A (Highly confident Major) 11385984 AF308537 env 0 327 207 BF1 F 12_BF F (Highly confident Major) 13183970 AY017461 pol 0 1022 894 BG G 14_BG G (Highly confident Major) 13310247 AF330733 pol 0 298 232 02C A 02_AG A (Highly confident Major) 13506310 AY010358 env 0 254 153 AG A 02_AG A (Highly confident Major) 13561523 AF335756 env 0 359 237 AG A 02_AG A (Highly confident Major) 13561525 AF335757 env 1 387 228 AG A 02_AG A (Highly confident Major) 14290028 AF377959 gag 0 1486 963 18_cpx A 03_AB A (Highly confident Major) 15281479 AF361877 vpr 4750 5041 147 CD D 16_A2D D (Highly confident Major) 15787958 AF332867 vif 4559 5138 522 BF F 12_BF F (Highly confident Major) 15788297 AF408632 vif 4610 5189 522 BF F 12_BF F (Highly confident Major) 16118260 AY037267 vif 4230 4809 522 BF F 12_BF F (Highly confident Major) 17352343 AY046058 gag 78 1566 957 U A 03_AB A (Highly confident Major) 17902092 AF423755 nef 8239 8863 246 BG G 14_BG G (Highly confident Major) 18418935 AF355335 env 0 624 346 AG A 02_AG A (Highly confident Major) 21671044 AB078688 pol 1280 2620 1116 BC C 08_BC C (Highly confident Major) 21671050 AB078691 pol 1280 2620 1116 BC C 08_BC C (Highly confident Major) 21685617 AF470734 pol 0 945 817 BF B 12_BF B (Highly confident Major) 21929494 AF425508 env 0 309 189 AD A 02_AG A (Highly confident Major) 21929508 AF425515 env 0 309 189 AD A 02_AG A (Highly confident Major) 21929524 AF425523 env 0 309 189 19_cpx A 02_AG A (Highly confident Major) 21929562 AF425542 env 0 309 189 ADG A 02_AG A (Highly confident Major) 21929654 AF425588 env 0 309 189 AD A 02_AG A (Highly confident Major) 22596553 AF457088 nef 7983 8604 246 A1A2D A 16_A2D A (Highly confident Major) 23955251 AF541563 pol 0 632 574 U A 09_cpx A (Highly confident Major) 24061848 AY140548 gag 0 741 618 HU A 06_cpx A (Highly confident Major) 24061858 AY140553 gag 3 1158 945 DK A 09_cpx A (Highly confident Major) 24061872 AY140560 gag 0 1055 769 DK A 09_cpx A (Highly confident Major) 24061874 AY140561 gag 0 1360 963 DK A 09_cpx A (Highly confident Major) 24061888 AY140568 gag 0 1049 769 U A 03_AB A (Highly confident Major) 24496523 AY140115 env 247 661 264 BF1 F 12_BF F (Highly confident Major) 24496548 AY140132 pol 0 1302 1167 BF1 B 12_BF B (Highly confident Major) 24496558 AY140139 env 248 635 261 BF1 F 12_BF F (Highly confident Major) 24496610 AY140169 env 237 571 211 BF1 F 12_BF F (Highly confident Major) 27227840 AP005206 pol 1280 4280 2703 0708 C 08_BC C (Highly confident Major) env 5404 7996 1588 C 07_BC C (Highly confident Major) 27227850 AP005207 pol 1280 4280 2703 0708 C 07_BC C (Highly confident Major) 27449387 AF456552 pol 0 1269 1134 BF B 12_BF B (Highly confident Major) 27848134 AJ490708 env 0 633 356 11A1 A 13_cpx A (Highly confident Major) 27848202 AJ490742 env 0 584 347 11A1 A 13_cpx A (Highly confident Major) 27848224 AJ490753 env 0 575 347 11A1 A 11_cpx A (Highly confident Major) 27848228 AJ490755 env 0 574 346 A1G A 13_cpx A (Highly confident Major) 27848308 AJ490795 env 0 637 376 A1G A 11_cpx A (Highly confident Major) 27848384 AJ491024 gag 0 620 570 11A1 A 11_cpx A (Highly confident Major) 27848396 AJ491030 gag 1 619 568 11A1 A 02_AG A (Highly confident Major) 27848454 AJ491059 gag 6 678 615 02A1 A 03_AB A (Highly confident Major) 27979402 AY180130 pol 0 288 277 U G 09_cpx G (Highly confident Major) 28172688 AJ429965 gag 1 664 606 U A 11_cpx A (Highly confident Major) 29648361 AY195069 env 0 524 325 02DO A 02_AG A (Highly confident Major) 31559641 AB097868 pol 2086 5083 2697 01BC C 07_BC C (Highly confident Major) 33578403 AY214039 gag 0 399 371 BF1 F 12_BF F (Highly confident Major) 34330003 AY237167 vpr 4905 5196 147 10A1 D 10_CD D (Highly confident Major) 34786231 AJ554769 env 0 573 350 U A 02_AG A (Highly confident Major) 34786685 AJ554996 env 0 562 380 O A 02_AG A (Highly confident Major) 37983142 AY346006 env 0 523 294 02U A 02_AG A (Highly confident Major) 38491850 AY371161 gag 0 1491 963 AHJU A 09_cpx A (Highly confident Major) 38491859 AY371162 gag 0 1476 963 AHJU A 09_cpx A (Highly confident Major) 38679131 AY352654 gag 154 1684 963 GKU A 04_cpx A (Highly confident Major) 38679140 AY352655 gag 108 1617 963 GKU A 04_cpx A (Highly confident Major) 42717015 AY365586 pol 0 1497 1356 BF B 12_BF B (Highly confident Major) 42717335 AY365746 pol 0 1497 1356 BF B 12_BF B (Highly confident Major) 42717777 AY365967 pol 0 1497 1356 BF B 12_BF B (Highly confident Major) 42766555 AY456312 gag 106 572 246 A1HU A 09_cpx A (Highly confident Major) 45360138 AY455778 vif 4296 4875 522 29_BF F 12_BF F (Highly confident Major) 45360168 AY455781 vpr 4995 5286 147 BF F 12_BF F (Highly confident Major) 45360208 AY455785 vif 4472 5051 522 BF F 12_BF F (Highly confident Major) 46243163 AY535660 gag 439 1927 963 06A1 A 03_AB A (Highly confident Major) 46946859 AY521633 nef 7953 8356 158 02A1 A 02_AG A (Highly confident Major) 47118249 AY536237 vif 4285 4864 522 BF F 12_BF F (Highly confident Major) 47778472 AY597296 env 1 477 342 BC C 07_BC C (Highly confident Major) 47778483 AY597302 env 0 477 342 BC C 07_BC C (Highly confident Major) 50980776 AY572851 pol 0 1299 1164 U A 03_AB A (Highly confident Major) 51950709 AY586540 gag 106 1597 963 18_cpx A 03_AB A (Highly confident Major) 51950719 AY586541 gag 102 1596 963 18_cpx A 03_AB A (Highly confident Major) 55416386 AY803393 gag 0 1476 963 11A1 A 03_AB A (Highly confident Major) 55735694 AY771460 pol 0 1196 1061 BF B 12_BF B (Highly confident Major) 55735738 AY771482 pol 0 1196 1061 BF B 12_BF B (Highly confident Major) 58200344 AY739044 nef 0 654 246 BG G 14_BG G (Highly confident Major) 58700450 AY887091 gag 2 1505 962 A1G A 03_AB A (Highly confident Major) 62467688 AY894993 gag 106 1599 963 18_cpx A 03_AB A (Highly confident Major) 62467707 AY894995 gag 280 1771 963 1819 A 09_cpx A (Highly confident Major) 62532468 AY856979 gag 37 1515 863 BC C 07_BC C (Highly confident Major) pol 1319 4319 2061 C 08_BC C (Highly confident Major) 62637566 AY781129 pol 0 1130 915 BF B 12_BF B (Highly confident Major) 62956395 AY967807 pol 1280 4280 2703 BC C 08_BC C (Highly confident Major) env 5410 7999 1588 C 08_BC C (Highly confident Major) 67577004 AY999375 pol 0 860 735 BF1 B 12_BF B (Highly confident Major)

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