Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60228 X04415 5tat 5404 5615 185 A1DK D D D (Major agrees Nested with high confidence) vpu 5648 5881 95 D D D (Major agrees Nested with high confidence) 305544 L11508 env 0 270 163 U A A A (Major agrees Nested with high confidence) 305546 L11509 env 0 270 163 U A A A (Major agrees Nested with high confidence) 305548 L11510 env 0 283 164 U A A A (Major agrees Nested with high confidence) 305840 L11751 gag 0 1458 962 BF1 F F F (Major agrees Nested with high confidence) 326286 M91849 env 0 276 163 BF1 F F F (Major agrees Nested with high confidence) 327340 M73473 pol 2 177 77 01G G G G (Major agrees Nested with high confidence) 327348 M73477 pol 2 180 77 AG A A A (Major agrees Nested with high confidence) 327356 M73480 pol 2 180 77 AG A A A (Major agrees Nested with high confidence) 329387 K03347 vpu 0 140 51 U C C C (Major agrees Nested with high confidence) 437357 L22952 env 0 2565 1588 AG A A A (Major agrees Nested with high confidence) 437360 L22955 5tat 86 297 185 A2C A A A (Major agrees Nested with high confidence) nef 3038 3303 94 A A A (Major agrees Nested with high confidence) 487351 U08954 env 0 282 168 BF F F F (Major agrees Nested with high confidence) 487366 U08963 env 7 289 168 BF F F F (Major agrees Nested with high confidence) 487522 U08763 env 0 348 212 AC A A A (Major agrees Nested with high confidence) 492871 A07116 5tat 5404 5615 185 A1DK D D D (Major agrees Nested with high confidence) vpu 5648 5881 95 D D D (Major agrees Nested with high confidence) 530105 L35454 env 0 1449 869 CD D D D (Major agrees Nested with high confidence) 530116 L35457 env 0 1458 871 CD D D D (Major agrees Nested with high confidence) 852438 U12409 5rev 8 80 59 AD D D D (Major agrees Nested with high confidence) 924285 U13441 env 0 276 138 AC A A A (Major agrees Nested with high confidence) 1430170 Z76340 env 0 276 163 AC A A A (Major agrees Nested with high confidence) 1495958 U27404 env 0 2555 1588 BF1 F F F (Major agrees Nested with high confidence) nef 2556 2904 147 F F F (Major agrees Nested with high confidence) 1495961 U27408 env 0 2555 1588 BF1 F F F (Major agrees Nested with high confidence) nef 2556 2902 145 F F F (Major agrees Nested with high confidence) 1763457 U76153 env 0 255 160 ACD A A A (Major agrees Nested with high confidence) 1763510 U76180 env 0 331 208 AC A A A (Major agrees Nested with high confidence) 1854678 U67039 pol 1 288 277 AG A A A (Major agrees Nested with high confidence) 1857260 U76035 5tat 5043 5254 185 A1GU A A A (Major agrees Nested with high confidence) 1895006 U86559 gag 0 710 549 BC C C C (Major agrees Nested with high confidence) 1899076 U86768 5tat 72 283 185 A2C A A A (Major agrees Nested with high confidence) vpu 323 556 95 A A A (Major agrees Nested with high confidence) 1899097 U86772 vpu 125 358 95 A2C A A A (Major agrees Nested with high confidence) 1899108 U86774 5tat 0 85 79 A2C A A A (Major agrees Nested with high confidence) nef 2813 3058 76 A A A (Major agrees Nested with high confidence) 1899114 U86775 5tat 0 144 132 A2C A A A (Major agrees Nested with high confidence) nef 2885 3087 64 A A A (Major agrees Nested with high confidence) 1899128 U86780 5tat 5190 5401 185 A2C A A A (Major agrees Nested with high confidence) ltr 8434 8990 256 A A A (Major agrees Nested with high confidence) 1905982 U86778 vpu 96 320 95 A2C C C C (Major agrees Nested with high confidence) 2231593 U85912 nef 2577 2860 102 AF A A A (Major agrees Nested with high confidence) 2231596 U85913 nef 2599 2884 104 AF A A A (Major agrees Nested with high confidence) 2231598 U85914 nef 2595 2877 102 AF A A A (Major agrees Nested with high confidence) 2231601 U85915 nef 2606 2889 102 AF A A A (Major agrees Nested with high confidence) 2231603 U85916 nef 2567 2850 102 AF A A A (Major agrees Nested with high confidence) 2231605 U85917 nef 2574 2857 102 AF A A A (Major agrees Nested with high confidence) 2231609 U85919 nef 2550 2839 102 AF A A A (Major agrees Nested with high confidence) 2351230 U86769 5tat 72 283 185 A2C A A A (Major agrees Nested with high confidence) vpu 323 556 95 A A A (Major agrees Nested with high confidence) 2351237 U86770 5tat 89 300 185 A2C A A A (Major agrees Nested with high confidence) vpu 340 573 95 A A A (Major agrees Nested with high confidence) 2570298 U88823 ltr 8441 8990 256 A1C C C C (Major agrees Nested with high confidence) 2570317 U88825 nef 8110 8731 246 A1G G G G (Major agrees Nested with high confidence) 2586782 AF025715 env 0 342 212 AD A A A (Major agrees Nested with high confidence) 2641488 AF032196 env 0 189 88 U A A A (Major agrees Nested with high confidence) 2827188 AF037317 gag 1 547 440 AF F F F (Major agrees Nested with high confidence) 2827195 AF037321 gag 0 525 440 AF F F F (Major agrees Nested with high confidence) 2897965 AF030526 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897967 AF030527 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897969 AF030528 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897971 AF030529 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897973 AF030530 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897975 AF030531 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897977 AF030532 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897979 AF030533 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897981 AF030534 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897983 AF030535 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897985 AF030536 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897987 AF030537 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897989 AF030538 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897991 AF030539 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897993 AF030540 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2897995 AF030541 env 0 152 88 M B B B (Major agrees Nested with high confidence) 2898007 AF030640 env 0 195 151 M B B B (Major agrees Nested with high confidence) 2898011 AF030642 env 0 195 151 M B B B (Major agrees Nested with high confidence) 2898035 AF030654 env 0 170 95 M D D D (Major agrees Nested with high confidence) 2898037 AF030655 env 0 170 95 M D D D (Major agrees Nested with high confidence) 2898043 AF030658 env 0 170 95 M D D D (Major agrees Nested with high confidence) 2920767 Z95448 env 0 519 307 U A A A (Major agrees Nested with high confidence) 3158076 AF014103 env 1 255 149 U A A A (Major agrees Nested with high confidence) 3204166 AJ006729 env 0 287 176 U B B B (Major agrees Nested with high confidence) 3204168 AJ006730 env 0 274 166 U D D D (Major agrees Nested with high confidence) 3204178 AJ006731 env 0 285 177 U D D D (Major agrees Nested with high confidence) 3204180 AJ006732 env 0 285 177 U D D D (Major agrees Nested with high confidence) 3204182 AJ006733 env 0 283 175 U B B B (Major agrees Nested with high confidence) 3204184 AJ006734 env 4 285 173 U B B B (Major agrees Nested with high confidence) 3204186 AJ006735 env 0 231 128 U B B B (Major agrees Nested with high confidence) 3204188 AJ006736 env 0 284 176 U D D D (Major agrees Nested with high confidence) 3204190 AJ006737 env 0 279 172 U D D D (Major agrees Nested with high confidence) 3204192 AJ006738 env 0 238 155 U B B B (Major agrees Nested with high confidence) 3204194 AJ006739 env 0 274 176 U D D D (Major agrees Nested with high confidence) 3242864 AF067754 env 0 210 141 U A A A (Major agrees Nested with high confidence) 3252936 AF067156 pol 1448 4448 2703 A1C C C C (Major agrees Nested with high confidence) nef 8144 8759 246 A A A (Major agrees Nested with high confidence) ltr 8427 8975 256 C C C (Major agrees Nested with high confidence) 3287137 Y16027 pol 3 87 84 O D D D (Major agrees Nested with high confidence) 3288388 AJ006022 5tat 5420 5631 185 N F F F (Major agrees Nested with high confidence)

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