Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60125 X64745 ltr 312 662 256 B B B B (Major agrees Nested with high confidence) 60136 X64756 nef 11 181 64 B B B B (Major agrees Nested with high confidence) 60137 X64757 nef 11 187 64 B B B B (Major agrees Nested with high confidence) 60138 X64758 nef 11 191 64 B B B B (Major agrees Nested with high confidence) 60139 Z11757 vif 108 185 71 B B B B (Major agrees Nested with high confidence) 60192 Z11530 vpu 6111 6347 95 B B B B (Major agrees Nested with high confidence) 61569 X01762 vpu 6103 6339 95 B B B B (Major agrees Nested with high confidence) 221474 D10112 vpu 6075 6308 95 B B B B (Major agrees Nested with high confidence) 240048 S70936 env 0 368 243 B B B B (Major agrees Nested with high confidence) 287691 X70597 pol 0 657 595 B B B B (Major agrees Nested with high confidence) 290973 L07083 env 0 183 119 A A A A (Major agrees Nested with high confidence) 290989 L15171 env 0 371 184 B B B B (Major agrees Nested with high confidence) 290990 L15172 env 0 386 184 B B B B (Major agrees Nested with high confidence) 291064 L15138 env 0 359 184 B B B B (Major agrees Nested with high confidence) 291066 L15140 env 0 359 184 B B B B (Major agrees Nested with high confidence) 291188 L13491 env 0 186 120 B B B B (Major agrees Nested with high confidence) 291197 M98504 env 0 724 388 D D D D (Major agrees Nested with high confidence) 291200 L07085 env 0 182 118 C C C C (Major agrees Nested with high confidence) 291202 L07086 env 0 189 119 C C C C (Major agrees Nested with high confidence) 291230 L07090 env 0 182 118 A A A A (Major agrees Nested with high confidence) 291260 M80662 env 330 780 205 B B B B (Major agrees Nested with high confidence) 291270 L15723 env 0 333 213 C C C C (Major agrees Nested with high confidence) 291272 L15724 env 0 331 211 C C C C (Major agrees Nested with high confidence) 291274 L15725 env 0 330 210 C C C C (Major agrees Nested with high confidence) 291276 L15726 env 0 327 210 C C C C (Major agrees Nested with high confidence) 291278 L15727 env 0 270 164 C C C C (Major agrees Nested with high confidence) 291282 L15729 env 0 330 210 C C C C (Major agrees Nested with high confidence) 291284 L15730 env 0 330 210 C C C C (Major agrees Nested with high confidence) 291286 L15731 env 0 245 153 C C C C (Major agrees Nested with high confidence) 291294 L15735 env 0 322 206 C C C C (Major agrees Nested with high confidence) 291300 L08287 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291301 L08288 env 2 123 70 B B B B (Major agrees Nested with high confidence) 291302 L08289 env 1 119 71 B B B B (Major agrees Nested with high confidence) 291303 L08290 env 1 120 71 B B B B (Major agrees Nested with high confidence) 291304 L08291 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291305 L08292 env 1 132 71 B B B B (Major agrees Nested with high confidence) 291306 L08293 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291308 L08296 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291309 L08297 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291310 L08298 env 2 123 70 B B B B (Major agrees Nested with high confidence) 291311 L08299 env 1 119 71 B B B B (Major agrees Nested with high confidence) 291313 L08301 env 1 132 71 B B B B (Major agrees Nested with high confidence) 291314 L08302 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291315 L08303 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291316 L08304 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291317 L08305 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291318 L08306 env 1 119 71 B B B B (Major agrees Nested with high confidence) 291319 L08307 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291320 L08308 env 1 132 71 B B B B (Major agrees Nested with high confidence) 291321 L08309 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291322 L08310 env 4 123 68 B B B B (Major agrees Nested with high confidence) 291323 L08311 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291330 L08318 env 0 309 190 B B B B (Major agrees Nested with high confidence) 291334 L08322 env 0 225 153 B B B B (Major agrees Nested with high confidence) 291346 L08334 env 0 312 190 B B B B (Major agrees Nested with high confidence) 291348 L08336 env 0 312 190 B B B B (Major agrees Nested with high confidence) 291349 L08337 env 0 312 190 B B B B (Major agrees Nested with high confidence) 291350 L08338 env 0 312 190 B B B B (Major agrees Nested with high confidence) 291351 L08339 env 0 255 141 B B B B (Major agrees Nested with high confidence) 291352 L08340 env 0 303 181 B B B B (Major agrees Nested with high confidence) 291353 L08341 env 0 314 189 B B B B (Major agrees Nested with high confidence) 291354 L08342 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291355 L08343 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291360 L08348 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291362 L08350 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291364 L08352 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291365 L08353 env 0 328 203 B B B B (Major agrees Nested with high confidence) 291366 L08354 env 0 271 181 B B B B (Major agrees Nested with high confidence) 291367 L08355 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291368 L08356 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291370 L08358 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291371 L08359 env 0 300 187 B B B B (Major agrees Nested with high confidence) 291374 L08362 env 0 309 190 B B B B (Major agrees Nested with high confidence) 291385 L08277 env 0 297 177 B B B B (Major agrees Nested with high confidence) 291390 L08282 env 0 297 177 B B B B (Major agrees Nested with high confidence) 291391 L08283 env 0 300 177 B B B B (Major agrees Nested with high confidence) 305436 L19334 env 0 273 161 B B B B (Major agrees Nested with high confidence) 305446 L11523 env 0 244 136 A A A A (Major agrees Nested with high confidence) 305448 L11524 env 0 244 136 A A A A (Major agrees Nested with high confidence) 305450 L11522 env 0 276 163 A A A A (Major agrees Nested with high confidence) 305472 L11471 env 0 270 153 A A A A (Major agrees Nested with high confidence) 305478 L11473 env 0 194 130 D D D D (Major agrees Nested with high confidence) 305492 L11479 env 0 197 87 A A A A (Major agrees Nested with high confidence) 305513 L11493 env 0 279 163 A A A A (Major agrees Nested with high confidence) 305515 L11491 env 2 279 163 A A A A (Major agrees Nested with high confidence) 305519 L11495 env 0 279 163 A A A A (Major agrees Nested with high confidence) 305523 L11496 env 8 238 156 A A A A (Major agrees Nested with high confidence) 305559 L11517 env 0 249 162 D D D D (Major agrees Nested with high confidence) 305646 L21676 env 0 277 127 B B B B (Major agrees Nested with high confidence) 305649 L21682 env 0 277 127 B B B B (Major agrees Nested with high confidence) 305650 L21679 env 0 277 127 B B B B (Major agrees Nested with high confidence) 305652 L21681 env 0 277 127 B B B B (Major agrees Nested with high confidence) 305654 L19571 env 1 336 209 F1 F F F (Major agrees Nested with high confidence) 305656 L19572 env 1 336 209 F1 F F F (Major agrees Nested with high confidence) 305658 L19573 env 1 336 209 F1 F F F (Major agrees Nested with high confidence) 305660 L19574 env 1 336 209 F1 F F F (Major agrees Nested with high confidence) 305662 L19575 env 1 334 209 F1 F F F (Major agrees Nested with high confidence) 305664 L19576 env 1 335 209 F1 F F F (Major agrees Nested with high confidence) 305666 L19577 env 1 336 209 F1 F F F (Major agrees Nested with high confidence) 305668 L19578 env 1 336 209 F1 F F F (Major agrees Nested with high confidence)

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