Launch prediction server Query precalculated results
Algorithms Prediction server Database query Output description Benchmark results

Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide

Multiple Substitution Correction Algorithm: Jukes-Cantor

All sites that include gaps were deleted.


Gene by Gene Subtype Prediction Summary (Download as an EXCEL file)

NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision
305687 L19631 env 0 171 120 D B B B (Major agrees Nested with high confidence)
306119 L11783 gag 0 1453 963 A1 G G G (Major agrees Nested with high confidence)
595330 U09993 env 0 105 58 B C C C (Major agrees Nested with high confidence)
595336 U09996 env 0 105 58 B C C C (Major agrees Nested with high confidence)
595368 U10012 env 0 105 58 B C C C (Major agrees Nested with high confidence)
699570 U21097 gag 0 271 250 A 01_AE 01_AE 01_AE (Major agrees Nested with high confidence)
924320 U13459 env 0 270 138 C A A A (Major agrees Nested with high confidence)
924328 U13463 env 0 273 138 C A A A (Major agrees Nested with high confidence)
957313 S77533 5tat 0 72 66 B A A A (Major agrees Nested with high confidence)
5rev 0 72 59 G G G (Major agrees Nested with high confidence)
1072371 X93469 env 0 220 154 G C C C (Major agrees Nested with high confidence)
1107639 X91364 vif 0 579 522 A G G G (Major agrees Nested with high confidence)
1144379 U33107 env 0 105 58 H A A A (Major agrees Nested with high confidence)
1209342 L32824 env 1 159 97 01_AE B B B (Major agrees Nested with high confidence)
1297235 U45045 pol 0 55 54 B C C C (Major agrees Nested with high confidence)
1297263 U45059 pol 0 55 54 B C C C (Major agrees Nested with high confidence)
1304743 U45065 pol 0 55 54 B C C C (Major agrees Nested with high confidence)
1304775 U45081 pol 0 55 54 B C C C (Major agrees Nested with high confidence)
1304803 U45095 pol 0 55 54 B C C C (Major agrees Nested with high confidence)
1527036 U59576 env 0 326 204 02_AG B B B (Major agrees Nested with high confidence)
1622736 U45481 env 0 150 87 C B B B (Major agrees Nested with high confidence)
1622742 U45484 env 0 113 65 C B B B (Major agrees Nested with high confidence)
1622752 U45489 env 0 104 56 C B B B (Major agrees Nested with high confidence)
1622754 U45490 env 0 150 86 C B B B (Major agrees Nested with high confidence)
1622760 U45493 env 0 132 72 C B B B (Major agrees Nested with high confidence)
1622762 U45494 env 0 145 82 C B B B (Major agrees Nested with high confidence)
1622764 U45495 env 0 140 81 C B B B (Major agrees Nested with high confidence)
1854712 U69207 pol 0 288 277 A 01_AE 01_AE 01_AE (Major agrees Nested with high confidence)
1906858 Z92551 env 0 220 154 G C C C (Major agrees Nested with high confidence)
1906860 Z92552 env 0 220 154 G C C C (Major agrees Nested with high confidence)
1906924 Z92584 env 0 220 155 02_AG A A A (Major agrees Nested with high confidence)
2108406 U66650 env 0 105 58 B C C C (Major agrees Nested with high confidence)
2108408 U66651 env 0 105 58 B C C C (Major agrees Nested with high confidence)
2108414 U66654 env 0 105 58 B C C C (Major agrees Nested with high confidence)
2109332 AF000465 env 0 341 211 02_AG A A A (Major agrees Nested with high confidence)
2338683 AF013901 pol 0 297 231 B D D D (Major agrees Nested with high confidence)
2338685 AF013902 pol 0 297 231 B D D D (Major agrees Nested with high confidence)
2342833 U56374 env 9 107 51 G C C C (Major agrees Nested with high confidence)
2585779 AF023922 gag 0 266 82 B C C C (Major agrees Nested with high confidence)
2585805 AF023935 gag 0 257 82 B C C C (Major agrees Nested with high confidence)
2585865 AF023965 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2586822 AF025735 pol 0 297 231 B D D D (Major agrees Nested with high confidence)
2587302 AF024323 pol 119 296 67 B C C C (Major agrees Nested with high confidence)
2587304 AF024324 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587306 AF024325 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587308 AF024326 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587310 AF024327 pol 95 219 67 B C C C (Major agrees Nested with high confidence)
2587312 AF024328 pol 92 201 67 B C C C (Major agrees Nested with high confidence)
2587314 AF024329 pol 92 204 67 B C C C (Major agrees Nested with high confidence)
2587318 AF024331 pol 89 198 67 B C C C (Major agrees Nested with high confidence)
2587320 AF024332 pol 92 234 67 B C C C (Major agrees Nested with high confidence)
2587322 AF024333 pol 95 234 67 B C C C (Major agrees Nested with high confidence)
2587324 AF024334 pol 92 237 67 B C C C (Major agrees Nested with high confidence)
2587326 AF024335 pol 89 231 67 B C C C (Major agrees Nested with high confidence)
2587328 AF024336 pol 92 234 67 B C C C (Major agrees Nested with high confidence)
2587330 AF024337 pol 95 225 67 B C C C (Major agrees Nested with high confidence)
2587332 AF024338 pol 95 240 67 B C C C (Major agrees Nested with high confidence)
2587334 AF024339 pol 92 234 67 B C C C (Major agrees Nested with high confidence)
2587336 AF024340 pol 89 237 67 B C C C (Major agrees Nested with high confidence)
2587338 AF024341 pol 89 231 67 B C C C (Major agrees Nested with high confidence)
2587340 AF024342 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587342 AF024343 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587344 AF024344 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587346 AF024345 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587348 AF024346 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587352 AF024348 pol 92 234 67 B C C C (Major agrees Nested with high confidence)
2587354 AF024349 pol 89 234 67 B C C C (Major agrees Nested with high confidence)
2587356 AF024350 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587358 AF024351 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587360 AF024352 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587364 AF024354 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587366 AF024355 pol 77 245 67 B C C C (Major agrees Nested with high confidence)
2587368 AF024356 pol 74 242 67 B C C C (Major agrees Nested with high confidence)
2587370 AF024357 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587372 AF024358 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587374 AF024359 pol 86 257 67 B C C C (Major agrees Nested with high confidence)
2587378 AF024361 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587380 AF024362 pol 89 257 67 B C C C (Major agrees Nested with high confidence)
2587382 AF024363 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587384 AF024364 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587386 AF024365 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587388 AF024366 pol 92 237 67 B C C C (Major agrees Nested with high confidence)
2587390 AF024367 pol 92 234 67 B C C C (Major agrees Nested with high confidence)
2587392 AF024368 pol 92 234 67 B C C C (Major agrees Nested with high confidence)
2587394 AF024369 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587396 AF024370 pol 92 237 67 B C C C (Major agrees Nested with high confidence)
2587398 AF024371 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587400 AF024372 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587402 AF024373 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587404 AF024374 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587406 AF024375 pol 95 263 67 B C C C (Major agrees Nested with high confidence)
2587408 AF024376 pol 83 251 67 B C C C (Major agrees Nested with high confidence)
2587410 AF024377 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587412 AF024378 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587414 AF024379 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587416 AF024380 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587418 AF024381 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587420 AF024382 pol 92 255 67 B C C C (Major agrees Nested with high confidence)
2587422 AF024383 pol 92 260 67 B C C C (Major agrees Nested with high confidence)
2587424 AF024384 pol 92 260 67 B C C C (Major agrees Nested with high confidence)

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Copyrighted by Bio-Data Mining Lab, Department of Bioinformatics and Life Sciences, Soongsil University, Seoul, Korea