Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60125 X64745 ltr 312 662 256 B B B B (Major agrees Nested with high confidence) 60136 X64756 nef 11 181 64 B B B B (Major agrees Nested with high confidence) 60137 X64757 nef 11 187 64 B B B B (Major agrees Nested with high confidence) 60138 X64758 nef 11 191 64 B B B B (Major agrees Nested with high confidence) 60139 Z11757 vif 108 185 71 B B B B (Major agrees Nested with high confidence) 60192 Z11530 vpu 6111 6347 95 B B B B (Major agrees Nested with high confidence) 60228 X04415 5tat 5404 5615 185 A1DK D D D (Major agrees Nested with high confidence) vpu 5648 5881 95 D D D (Major agrees Nested with high confidence) 61569 X01762 vpu 6103 6339 95 B B B B (Major agrees Nested with high confidence) 221474 D10112 vpu 6075 6308 95 B B B B (Major agrees Nested with high confidence) 240048 S70936 env 0 368 243 B B B B (Major agrees Nested with high confidence) 287691 X70597 pol 0 657 595 B B B B (Major agrees Nested with high confidence) 288663 Z19114 env 0 105 58 B B B (Major agrees Nested with high confidence) 288664 Z18880 env 0 105 58 B B B (Major agrees Nested with high confidence) 288666 Z18881 env 0 105 58 B B B (Major agrees Nested with high confidence) 288668 Z18882 env 0 108 58 B B B (Major agrees Nested with high confidence) 288670 Z19119 env 0 105 58 B B B (Major agrees Nested with high confidence) 288671 Z15174 env 0 105 58 B B B (Major agrees Nested with high confidence) 288673 Z15175 env 0 105 58 B B B (Major agrees Nested with high confidence) 288697 Z15161 env 0 105 58 B B B (Major agrees Nested with high confidence) 288699 Z15178 env 0 105 58 B B B (Major agrees Nested with high confidence) 288701 Z19116 env 0 105 58 B B B (Major agrees Nested with high confidence) 288712 Z15162 env 0 105 58 B B B (Major agrees Nested with high confidence) 288714 Z15188 env 0 105 58 B B B (Major agrees Nested with high confidence) 288719 Z15189 env 0 105 58 B B B (Major agrees Nested with high confidence) 288742 Z15186 env 0 105 58 B B B (Major agrees Nested with high confidence) 288758 Z15192 env 0 105 58 B B B (Major agrees Nested with high confidence) 288766 Z15169 env 0 105 58 B B B (Major agrees Nested with high confidence) 288768 Z15167 env 0 105 58 B B B (Major agrees Nested with high confidence) 288772 Z18879 env 0 105 58 B B B (Major agrees Nested with high confidence) 288774 Z15168 env 0 105 58 B B B (Major agrees Nested with high confidence) 288779 Z15185 env 0 105 58 B B B (Major agrees Nested with high confidence) 288783 Z15166 env 0 105 58 B B B (Major agrees Nested with high confidence) 288794 Z15163 env 0 105 58 B B B (Major agrees Nested with high confidence) 288797 Z19117 env 0 108 58 B B B (Major agrees Nested with high confidence) 288800 Z15170 env 0 105 58 B B B (Major agrees Nested with high confidence) 288802 Z19118 env 0 105 58 B B B (Major agrees Nested with high confidence) 288803 Z15179 env 0 102 57 B B B (Major agrees Nested with high confidence) 288805 Z15190 env 0 105 58 B B B (Major agrees Nested with high confidence) 288807 Z15183 env 0 105 58 B B B (Major agrees Nested with high confidence) 288809 Z15173 env 0 105 58 B B B (Major agrees Nested with high confidence) 288829 Z15164 env 0 105 58 B B B (Major agrees Nested with high confidence) 288841 Z15191 env 0 105 58 B B B (Major agrees Nested with high confidence) 288845 Z15165 env 0 105 58 B B B (Major agrees Nested with high confidence) 288851 Z19113 env 0 105 58 B B B (Major agrees Nested with high confidence) 288856 Z15187 env 0 105 58 B B B (Major agrees Nested with high confidence) 288858 Z15184 env 0 105 58 B B B (Major agrees Nested with high confidence) 288860 Z19112 env 0 105 58 B B B (Major agrees Nested with high confidence) 288861 Z19111 env 3 105 55 B B B (Major agrees Nested with high confidence) 288862 Z19115 env 0 105 58 B B B (Major agrees Nested with high confidence) 290973 L07083 env 0 183 119 A A A A (Major agrees Nested with high confidence) 290975 L16614 env 0 105 58 B B B (Major agrees Nested with high confidence) 290977 L16595 env 0 105 58 B B B (Major agrees Nested with high confidence) 290979 L16618 env 0 105 58 C C C (Major agrees Nested with high confidence) 290989 L15171 env 0 371 184 B B B B (Major agrees Nested with high confidence) 290990 L15172 env 0 386 184 B B B B (Major agrees Nested with high confidence) 291064 L15138 env 0 359 184 B B B B (Major agrees Nested with high confidence) 291066 L15140 env 0 359 184 B B B B (Major agrees Nested with high confidence) 291188 L13491 env 0 186 120 B B B B (Major agrees Nested with high confidence) 291197 M98504 env 0 724 388 D D D D (Major agrees Nested with high confidence) 291198 L16591 env 0 111 58 C C C (Major agrees Nested with high confidence) 291200 L07085 env 0 182 118 C C C C (Major agrees Nested with high confidence) 291202 L07086 env 0 189 119 C C C C (Major agrees Nested with high confidence) 291204 L16598 env 0 108 57 B B B (Major agrees Nested with high confidence) 291206 L16599 env 0 108 57 B B B (Major agrees Nested with high confidence) 291208 L16600 env 0 105 58 B B B (Major agrees Nested with high confidence) 291210 L16605 env 0 105 58 B B B (Major agrees Nested with high confidence) 291212 L16606 env 0 105 58 B B B (Major agrees Nested with high confidence) 291218 L16608 env 0 105 58 B B B (Major agrees Nested with high confidence) 291220 L16609 env 0 105 58 B B B (Major agrees Nested with high confidence) 291224 L16601 env 0 111 58 B B B (Major agrees Nested with high confidence) 291230 L07090 env 0 182 118 A A A A (Major agrees Nested with high confidence) 291240 L16610 env 0 111 58 B B B (Major agrees Nested with high confidence) 291242 L16611 env 0 105 58 C C C (Major agrees Nested with high confidence) 291244 L16612 env 0 105 58 B B B (Major agrees Nested with high confidence) 291250 L16613 env 0 105 58 C C C (Major agrees Nested with high confidence) 291253 L16617 env 0 111 58 B B B (Major agrees Nested with high confidence) 291255 L16616 env 0 111 58 B B B (Major agrees Nested with high confidence) 291260 M80662 env 330 780 205 B B B B (Major agrees Nested with high confidence) 291270 L15723 env 0 333 213 C C C C (Major agrees Nested with high confidence) 291272 L15724 env 0 331 211 C C C C (Major agrees Nested with high confidence) 291274 L15725 env 0 330 210 C C C C (Major agrees Nested with high confidence) 291276 L15726 env 0 327 210 C C C C (Major agrees Nested with high confidence) 291278 L15727 env 0 270 164 C C C C (Major agrees Nested with high confidence) 291282 L15729 env 0 330 210 C C C C (Major agrees Nested with high confidence) 291284 L15730 env 0 330 210 C C C C (Major agrees Nested with high confidence) 291286 L15731 env 0 245 153 C C C C (Major agrees Nested with high confidence) 291294 L15735 env 0 322 206 C C C C (Major agrees Nested with high confidence) 291300 L08287 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291301 L08288 env 2 123 70 B B B B (Major agrees Nested with high confidence) 291302 L08289 env 1 119 71 B B B B (Major agrees Nested with high confidence) 291303 L08290 env 1 120 71 B B B B (Major agrees Nested with high confidence) 291304 L08291 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291305 L08292 env 1 132 71 B B B B (Major agrees Nested with high confidence) 291306 L08293 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291308 L08296 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291309 L08297 env 1 123 71 B B B B (Major agrees Nested with high confidence) 291310 L08298 env 2 123 70 B B B B (Major agrees Nested with high confidence) 291311 L08299 env 1 119 71 B B B B (Major agrees Nested with high confidence) 291313 L08301 env 1 132 71 B B B B (Major agrees Nested with high confidence)

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