Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60064 X62098 gag 0 196 143 B B B (Unambiguous Nested) 60066 Z11130 gag 0 127 83 B B B (Unambiguous Nested) 60068 Z11134 gag 0 217 160 B B B (Unambiguous Nested) 60069 Z11141 gag 0 225 162 B B B (Unambiguous Nested) 60071 Z11144 gag 0 183 129 B B B (Unambiguous Nested) 60073 Z11145 gag 0 232 169 B B B (Unambiguous Nested) 60075 Z11146 gag 0 231 167 B B B (Unambiguous Nested) 60076 Z11147 gag 0 238 176 F F F (Unambiguous Nested) 60078 Z11148 gag 0 227 169 A A A (Unambiguous Nested) 60079 Z11149 gag 0 207 156 A A A (Unambiguous Nested) 60081 Z11150 gag 0 221 160 B B B (Unambiguous Nested) 60083 Z11131 gag 0 229 165 B B B (Unambiguous Nested) 60085 Z11132 gag 2 232 166 B B B (Unambiguous Nested) 60091 Z11136 gag 0 225 168 B B B (Unambiguous Nested) 60093 Z11137 gag 0 223 166 B B B (Unambiguous Nested) 60095 Z11138 gag 0 227 166 C C C (Unambiguous Nested) 60097 Z11139 gag 0 182 128 B B B (Unambiguous Nested) 60099 Z11140 gag 0 226 165 C C C (Unambiguous Nested) 60101 Z11142 gag 0 227 166 C C C (Unambiguous Nested) 60103 Z11143 gag 0 230 166 B B B (Unambiguous Nested) 60105 X60442 gag 0 213 156 B B B (Unambiguous Nested) 60107 X60443 gag 0 229 165 B B B (Unambiguous Nested) 60109 X60444 gag 6 224 161 B B B (Unambiguous Nested) 60110 X60445 gag 0 199 145 B B B (Unambiguous Nested) 60111 X60446 gag 0 229 165 B B B (Unambiguous Nested) 60115 X63040 nef 13 628 246 B B B B (Unambiguous Nested) ltr 296 628 256 B B B (Unambiguous Nested) 60117 X63041 nef 13 631 246 B B B B (Unambiguous Nested) ltr 299 631 256 B B B (Unambiguous Nested) 60119 X63042 nef 13 631 246 B B B B (Unambiguous Nested) ltr 299 631 256 B B B (Unambiguous Nested) 60121 X63043 nef 13 613 246 B B B B (Unambiguous Nested) ltr 281 613 256 B B B (Unambiguous Nested) 60123 X63044 nef 13 628 246 B B B B (Unambiguous Nested) ltr 296 628 256 B B B (Unambiguous Nested) 60125 X64745 nef 11 644 246 B B B B (Unambiguous Nested) 60126 X64746 nef 11 644 246 B B B B (Unambiguous Nested) ltr 312 662 256 B B B (Unambiguous Nested) 60127 X64747 nef 11 632 246 B B B B (Unambiguous Nested) ltr 300 650 256 B B B (Unambiguous Nested) 60128 X64748 nef 11 635 246 B B B B (Unambiguous Nested) ltr 303 653 256 B B B (Unambiguous Nested) 60129 X64749 nef 11 635 246 B B B B (Unambiguous Nested) ltr 303 653 256 B B B (Unambiguous Nested) 60130 X64750 nef 11 638 246 B B B B (Unambiguous Nested) ltr 306 656 256 B B B (Unambiguous Nested) 60131 X64751 nef 11 638 246 B B B B (Unambiguous Nested) ltr 306 656 256 B B B (Unambiguous Nested) 60132 X64752 nef 11 640 246 B B B B (Unambiguous Nested) ltr 300 658 256 B B B (Unambiguous Nested) 60133 X64753 nef 11 637 246 B B B B (Unambiguous Nested) ltr 297 655 256 B B B (Unambiguous Nested) 60134 X64754 nef 11 632 246 B B B B (Unambiguous Nested) ltr 300 650 256 B B B (Unambiguous Nested) 60135 X64755 nef 11 632 246 B B B B (Unambiguous Nested) ltr 300 650 256 B B B (Unambiguous Nested) 60139 Z11757 5rev 182 248 54 B B B B (Unambiguous Nested) 5tat 182 248 60 B B B (Unambiguous Nested) 3tat 251 342 91 B B B (Unambiguous Nested) 3rev 251 344 93 B B B (Unambiguous Nested) 60142 Z11756 5tat 62 123 55 B B B B (Unambiguous Nested) ltr 129 407 185 B B B (Unambiguous Nested) nef 130 378 89 B B B (Unambiguous Nested) 60144 X64650 5tat 38 245 181 ? B B B (Unambiguous Nested) 60175 X61357 env 0 1074 737 B B B B (Unambiguous Nested) 60177 X61358 env 0 1074 737 B B B B (Unambiguous Nested) 60179 X61355 env 0 1074 737 B B B B (Unambiguous Nested) 60181 X61356 env 0 1074 737 B B B B (Unambiguous Nested) 60182 X61359 env 0 1077 737 B B B B (Unambiguous Nested) 60184 X61351 env 0 1077 737 B B B B (Unambiguous Nested) 60186 X61352 env 0 1077 737 B B B B (Unambiguous Nested) 60188 X61353 env 0 1074 737 B B B B (Unambiguous Nested) 60190 X61354 env 0 1074 737 B B B B (Unambiguous Nested) 60192 Z11530 gag 829 2332 963 B B B B (Unambiguous Nested) pol 2124 5136 2703 B B B (Unambiguous Nested) vif 5080 5659 522 B B B (Unambiguous Nested) vpr 5598 5890 147 B B B (Unambiguous Nested) 5tat 5870 6081 185 B B B (Unambiguous Nested) env 6261 8817 1587 B B B (Unambiguous Nested) nef 8818 9439 246 B B B (Unambiguous Nested) ltr 9107 9777 256 B B B (Unambiguous Nested) 60204 X57446 env 0 636 434 B B B B (Unambiguous Nested) 60208 X57449 env 0 874 506 B B B B (Unambiguous Nested) 60212 X57447 env 0 659 452 B B B B (Unambiguous Nested) 60213 X57450 env 0 875 507 B B B B (Unambiguous Nested) 60214 X57460 env 12 492 280 B B B B (Unambiguous Nested) 60216 X57461 env 0 670 368 B B B B (Unambiguous Nested) 60223 X57451 env 0 872 506 B B B B (Unambiguous Nested) 60225 X57462 env 0 209 112 B B B B (Unambiguous Nested) nef 210 831 246 B B B (Unambiguous Nested) ltr 499 1021 256 B B B (Unambiguous Nested) 60226 X57463 env 0 209 112 B B B B (Unambiguous Nested) nef 210 794 221 B B B (Unambiguous Nested) ltr 462 985 256 B B B (Unambiguous Nested) 60227 X57464 env 0 209 112 B B B B (Unambiguous Nested) nef 210 831 246 B B B (Unambiguous Nested) ltr 499 1022 256 B B B (Unambiguous Nested) 60228 X04415 vif 4615 5194 522 A1DK G A A (Unambiguous Nested) vpr 5133 5424 147 D D D (Unambiguous Nested) 60236 X63045 nef 13 628 246 B B B B (Unambiguous Nested)

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