Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60087 Z11133 gag 0 224 164 G 04_cpx Undecided 60089 Z11135 gag 0 194 140 G 06_cpx Undecided 60113 X58780 nef 16 637 246 ? B B Undecided ltr 305 637 256 B B Undecided 60140 X58781 5rev 21 93 59 ? D 05_DF Undecided 3rev 94 314 176 D D Undecided env 97 296 90 B B Undecided 266069 S56177 gag 0 200 126 B 14_BG Undecided 287718 X70627 pol 0 657 595 ? B B Undecided 288826 Z15181 env 0 102 57 B 10_CD Undecided 288839 Z15177 env 0 102 57 B 10_CD Undecided 290969 L16594 env 0 105 58 B C Undecided 290971 L16620 env 0 105 58 B C Undecided 290981 L16619 env 0 105 58 B C Undecided 291214 L16607 env 0 111 58 G B Undecided 325982 L08683 pol 0 865 769 ? B B Undecided 327777 AH003604 5rev 1897 1960 50 ? D B Undecided 5tat 1897 1960 57 D B Undecided 328595 L06697 env 0 105 58 B C Undecided 328987 M61455 env 0 102 57 B G Undecided 329031 M61483 env 0 100 53 B B Undecided 329163 M61554 env 0 105 58 B G Undecided 329175 M61560 env 0 102 58 B 15_01B Undecided 345304 Z15182 env 0 105 58 C B Undecided 392379 U00404 env 1 106 58 G 14_BG Undecided 415100 L21785 env 0 105 58 C 15_01B Undecided 415102 L21770 env 0 105 58 C B Undecided 415112 L21783 env 0 105 58 C B Undecided 415122 L21782 env 0 105 58 C B Undecided 415128 L21787 env 0 105 58 C B Undecided 415130 L21786 env 0 105 58 C B Undecided 415132 L21788 env 0 105 58 C B Undecided 415134 L21771 env 0 105 58 C B Undecided 415138 L21776 env 0 105 58 C B Undecided 415140 L21831 env 0 105 58 C B Undecided 415142 L21781 env 0 105 58 C B Undecided 415144 L21832 env 0 105 58 C B Undecided 415146 L21833 env 0 105 58 C B Undecided 415152 L21834 env 0 105 58 C B Undecided 415158 L21800 env 0 105 58 C B Undecided 415162 L21836 env 0 105 58 C B Undecided 415166 L21790 env 0 105 58 C B Undecided 415172 L21808 env 0 105 58 C B Undecided 415176 L21801 env 0 105 58 C B Undecided 415184 L21795 env 0 105 58 C B Undecided 415190 L21805 env 0 105 58 C B Undecided 415194 L21806 env 0 105 58 C B Undecided 415204 L21818 env 0 105 58 C B Undecided 415206 L21814 env 0 105 58 C B Undecided 415208 L21817 env 0 105 58 C B Undecided 415218 L21819 env 0 105 58 C B Undecided 415226 L21824 env 0 105 58 C B Undecided 505807 U10714 env 0 105 58 B G Undecided 505809 U10715 env 0 105 58 B G Undecided 505839 U10730 env 0 105 58 G G Undecided 505841 U10731 env 0 105 58 B G Undecided 505843 U10732 env 0 105 58 B G Undecided 505847 U10734 env 0 105 58 B G Undecided 505879 U10750 env 0 105 58 C G Undecided 505994 U10768 env 0 105 58 G G Undecided 506008 U10775 env 0 105 58 B C Undecided 506036 U10789 env 0 105 58 C G Undecided 506040 U10791 env 0 105 58 G G Undecided 506042 U10792 env 0 105 58 B G Undecided 506044 U10793 env 0 105 58 B G Undecided 506086 U10814 env 0 105 58 B G Undecided 506088 U10815 env 0 105 58 B G Undecided 506094 U10818 env 0 105 58 G 06_cpx Undecided 506096 U10819 env 0 105 58 G 06_cpx Undecided 506116 U10829 env 0 105 58 B G Undecided 506118 U10830 env 0 105 58 B G Undecided 506120 U10831 env 0 105 58 B G Undecided 506122 U10832 env 0 105 58 B G Undecided 506124 U10833 env 0 105 58 B G Undecided 506134 U10838 env 0 105 58 B G Undecided 506136 U10839 env 0 105 58 B G Undecided 506140 U10840 env 0 105 58 B G Undecided 508180 Z34823 gag 0 256 244 A 16_A2D Undecided 509846 L34435 env 0 105 58 C B Undecided 509930 L34455 env 0 105 58 C B Undecided 533449 U08363 env 0 671 382 ? G 06_cpx Undecided 555966 U15069 ltr 2 106 79 B B Undecided 632609 U19440 gag 0 311 298 B D Undecided 632942 L23103 gag 0 563 460 ? G 13_cpx Undecided 710454 S74214 env 0 296 249 B 14_BG Undecided 887730 AH006840 pol 1 204 177 ? B 12_BF Undecided 1185069 L23105 gag 0 562 459 ? G 13_cpx Undecided 1556507 U70276 gag 1 181 128 K 06_cpx Undecided 1556561 U70303 gag 0 186 135 F 05_DF Undecided 1556563 U70304 gag 0 174 123 H H Undecided 1621360 U70805 env 0 102 57 F 03_AB Undecided 1621362 U70806 env 0 102 57 F B Undecided 1621384 U70817 env 0 102 57 D C Undecided 1621392 U70821 env 0 102 57 B C Undecided 1667405 U70597 env 0 102 57 B C Undecided 1667407 U70598 env 0 102 57 B C Undecided 1667409 U70599 env 0 102 57 B C Undecided 1667411 U70600 env 0 102 57 A C Undecided 1667429 U70609 env 0 102 57 D C Undecided 1667435 U70612 env 0 102 57 F 03_AB Undecided

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