Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60228 X04415 gag 349 1867 963 A1DK A 03_AB Undecided pol 1662 4671 2703 K 06_cpx Undecided env 5798 8378 1587 D 10_CD Undecided nef 8379 9009 246 A 02_AG Undecided ltr 8677 9229 256 H H Undecided 305555 L11515 env 0 234 160 U A 11_cpx Undecided 305557 L11514 env 1 240 162 U A 11_cpx Undecided 305896 L11756 gag 0 1477 963 AD H 06_cpx Undecided 305978 L11776 gag 0 1483 963 ACFG A 03_AB Undecided 306133 L11790 gag 0 1465 963 AGHU A 03_AB Undecided 306137 L11792 gag 0 1471 963 GH H H Undecided 326272 M91856 env 0 276 163 BF1 F 05_DF Undecided 326274 M91855 env 0 276 163 BF1 F 05_DF Undecided 326276 M91853 env 0 276 163 BF1 F 05_DF Undecided 326278 M91851 env 0 276 163 BF1 F 05_DF Undecided 326280 M91854 env 0 276 163 BF1 F 05_DF Undecided 326282 M91852 env 0 276 163 BF1 F 05_DF Undecided 326284 M91850 env 0 276 163 BF1 F 05_DF Undecided 326288 M91847 env 0 276 163 BF1 F 05_DF Undecided 326290 M91846 env 0 276 163 BF1 F 05_DF Undecided 326292 M91845 env 0 276 163 BF1 F 05_DF Undecided 326294 M91843 env 0 276 163 BF1 F 05_DF Undecided 326296 M91841 env 0 276 163 BF1 F 05_DF Undecided 326298 M91844 env 0 276 163 BF1 F 05_DF Undecided 326300 M91842 env 0 276 163 BF1 F 05_DF Undecided 326302 M91840 env 0 276 163 BF1 F 05_DF Undecided 327350 M73472 pol 2 177 77 AG 01_AE 01_AE Undecided 329387 K03347 env 57 2602 1585 U H 04_cpx Undecided nef 2603 2709 50 C 02_AG Undecided 329392 M15896 vpu 0 179 70 A1GU G 02_AG Undecided nef 2668 3296 246 01_AE 13_cpx Undecided ltr 2957 3457 256 01_AE 11_cpx Undecided 424168 L22083 gag 0 1456 963 A2C H H Undecided 437347 L22942 env 0 2580 1588 AD D 10_CD Undecided 437360 L22955 env 490 3037 1588 A2C A 16_A2D Undecided 463057 L20587 vpr 5613 5906 147 O G G Undecided 5tat 5887 6092 182 D D Undecided vpu 6127 6367 95 K 06_cpx Undecided nef 8865 9454 222 G 06_cpx Undecided 469239 L20571 vpr 5588 5890 147 O J 13_cpx Undecided 5tat 5871 6079 185 F F Undecided nef 8891 9518 244 H 06_cpx Undecided 487349 U08953 env 0 282 168 BF F 12_BF Undecided 487353 U08955 env 7 289 168 BF F 12_BF Undecided 487355 U08956 env 1 282 168 BF B 12_BF Undecided 487357 U08957 env 1 282 168 BF B 12_BF Undecided 487359 U08958 env 0 282 168 BF F 12_BF Undecided 487361 U08959 env 0 282 168 BF F 12_BF Undecided 487363 U08960 env 0 282 168 BF D 05_DF Undecided 487364 U08962 env 0 282 168 BF F 12_BF Undecided 487367 U08964 env 8 289 168 BF B F Undecided 487369 U08965 env 0 282 168 BF F 12_BF Undecided 487371 U08966 env 7 289 168 BF F 12_BF Undecided 487373 U08967 env 7 289 168 BF F 12_BF Undecided 487375 U08968 env 7 289 168 BF F 12_BF Undecided 487377 U08969 env 7 289 168 BF F 12_BF Undecided 487379 U08970 env 7 289 168 BF F 12_BF Undecided 487381 U08971 env 0 282 168 BF F 12_BF Undecided 492871 A07116 gag 349 1867 963 A1DK A 03_AB Undecided pol 1662 4671 2703 K 06_cpx Undecided env 5798 8378 1587 D 10_CD Undecided nef 8379 9009 246 A 02_AG Undecided ltr 8677 9229 256 H H Undecided 492901 A10048 ltr 2 358 91 O 01_AE 01_AE Undecided 492902 A10049 nef 3 368 146 O H 04_cpx Undecided 497659 U10019 env 7 289 168 BF F 12_BF Undecided 497660 U10020 env 7 289 168 BF F 12_BF Undecided 497662 U10021 env 7 289 168 BF F 12_BF Undecided 497664 U10022 env 7 289 168 BF F 12_BF Undecided 497666 U10023 env 8 289 168 BF B 12_BF Undecided 497668 U10024 env 7 289 168 BF B 12_BF Undecided 497670 U10025 env 0 317 197 BF B 12_BF Undecided 497671 U10026 env 0 280 167 BF F 12_BF Undecided 602108 U00420 env 0 299 181 BF B 12_BF Undecided 852436 U12408 env 192 1301 704 AD D 10_CD Undecided 1002544 U28662 env 0 387 259 U F 12_BF Undecided 1002578 U28679 env 0 381 259 U F 05_DF Undecided 1079635 U36881 env 0 2565 1587 A1D D D Undecided 1144363 U33099 env 0 1113 621 CGJ K J Undecided 1145670 U39253 env 0 2547 1585 CD D 10_CD Undecided 1145672 U39254 env 0 2532 1585 CD D 10_CD Undecided 1150907 U43172 gag 0 1465 963 AGHU A 03_AB Undecided 1150911 U43174 env 0 1486 855 AG G G Undecided 1171181 U43101 env 0 814 448 U H 04_cpx Undecided 1171183 U43102 env 0 871 504 U J 13_cpx Undecided 1226128 L76899 env 0 273 161 U F K Undecided 1226132 L76901 env 0 229 160 BF1 F 12_BF Undecided 1408286 U61879 env 0 345 212 CD D 10_CD Undecided 1495979 U27444 env 0 955 658 BF1 H 12_BF Undecided 1514520 X90923 env 0 882 523 AGHU F K Undecided 1592553 U51289 ltr 0 538 184 BF1 H H Undecided 1695850 U58157 pol 0 288 277 02DO G 02_AG Undecided 1857260 U76035 pol 1298 4310 2703 A1GU G G Undecided vif 4254 4833 522 K 06_cpx Undecided vpr 4772 5063 147 F 13_cpx Undecided vpu 5296 5519 94 G 14_BG Undecided 1894988 U86550 gag 0 728 558 AC C 10_CD Undecided 1899103 U86773 5rev 13 85 59 A2C G A Undecided vpu 125 358 95 A 16_A2D Undecided 1899108 U86774 5rev 13 85 59 A2C C A Undecided

1 - 100

>

>>