Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 291196 M98503 env 0 801 444 A A 11_cpx Undecided 305421 L11458 env 1 263 163 A A 11_cpx Undecided 305423 L11518 env 0 252 161 A A 11_cpx Undecided 305474 L11470 env 0 286 164 A A 13_cpx Undecided 305476 L11469 env 0 286 164 A A 13_cpx Undecided 305482 L11474 env 1 276 163 A A 11_cpx Undecided 305488 L11477 env 0 244 163 A A 11_cpx Undecided 305490 L11478 env 0 287 163 A A 11_cpx Undecided 305494 L11480 env 0 247 163 01_AE 01_AE 01_AE Undecided 305496 L11481 env 0 278 165 01_AE 01_AE 01_AE Undecided 305517 L11492 env 6 216 101 A A 02_AG Undecided 305521 L11494 env 0 252 163 A A 13_cpx Undecided 305532 L11501 env 0 272 163 G G 06_cpx Undecided 305534 L11502 env 1 264 157 G G 06_cpx Undecided 305535 L11503 env 0 229 152 G G 06_cpx Undecided 305561 L11516 env 0 226 117 D D D Undecided 305563 L11525 env 0 277 164 G G 06_cpx Undecided 305676 L19625 env 0 347 213 A A 02_AG Undecided 305683 L19629 env 0 240 153 A A 02_AG Undecided 325857 M98920 env 0 225 136 D D 10_CD Undecided 325859 M98921 env 0 258 148 D D 10_CD Undecided 325861 M98922 env 0 225 148 D D 10_CD Undecided 327344 M73475 pol 2 180 77 A A 02_AG Undecided 327579 L07175 env 0 302 158 B B 12_BF Undecided 328305 M58246 ltr 289 854 256 B B B Undecided 328720 L01299 env 0 253 162 D D D Undecided 403901 U01513 env 0 180 129 B B 15_01B Undecided 403903 U01514 env 0 178 127 B B 15_01B Undecided 403905 U01515 env 0 178 127 B B 15_01B Undecided 403907 U01516 env 5 177 121 B B 15_01B Undecided 403909 U01517 env 0 178 127 B B 15_01B Undecided 403911 U01518 env 0 178 127 B B 15_01B Undecided 403913 U01519 env 0 174 123 B B 15_01B Undecided 403915 U01520 env 0 176 125 B B 15_01B Undecided 403917 U01521 env 0 191 134 B B 15_01B Undecided 403919 U01522 env 0 178 127 B B 15_01B Undecided 403921 U01523 env 0 177 126 B B 15_01B Undecided 403923 U01524 env 0 194 137 B B 15_01B Undecided 403925 U01525 env 0 191 134 B B 15_01B Undecided 403927 U01526 env 0 191 134 B B 15_01B Undecided 403929 U01527 env 0 184 129 B B 15_01B Undecided 403931 U01528 env 0 204 135 B B 15_01B Undecided 403933 U01529 env 1 194 136 B B 15_01B Undecided 424167 L22082 nef 2993 3312 107 F1 F 12_BF Undecided 455197 L28841 ltr 0 504 164 B B B Undecided 455242 L28905 ltr 0 514 164 B B B Undecided 458496 X77971 env 0 213 147 F1 F F Undecided 458500 X77973 env 0 213 147 F1 F 12_BF Undecided 458516 X77980 env 0 213 147 F1 F 12_BF Undecided 458524 X77983 env 0 213 147 F1 F F Undecided 468671 X72048 env 0 882 523 A A 02_AG Undecided 471744 U07102 env 0 1272 732 C C 07_BC Undecided 475089 L07456 env 0 376 226 B B 15_01B Undecided 487478 U08741 env 0 270 163 D D 16_A2D Undecided 488348 Z33476 gag 0 259 245 A A 11_cpx Undecided 493546 U08801 env 0 2534 1588 B B 15_01B Undecided 507758 U09666 env 4 888 523 H H H Undecided 550672 Z37773 env 0 276 163 B B 14_BG Undecided 550674 Z37774 env 0 276 163 B B 14_BG Undecided 550676 Z37775 env 0 276 163 B B 14_BG Undecided 550944 Z37912 env 0 276 163 B B 14_BG Undecided 572710 X80453 env 1 887 522 A A 11_cpx Undecided 572711 X80454 env 1 911 522 A A 11_cpx Undecided 605887 U00365 env 0 183 129 B B 15_01B Undecided 605893 U00371 env 0 183 129 B B 15_01B Undecided 605894 U00372 env 0 188 131 B B 15_01B Undecided 605899 U00377 env 0 191 134 B B 15_01B Undecided 605900 U00378 env 0 188 131 B B 15_01B Undecided 605903 U00381 env 0 184 129 B B 15_01B Undecided 605904 U00382 env 8 202 137 B B 15_01B Undecided 605908 U00386 env 5 205 143 B B 15_01B Undecided 605909 U00387 env 5 205 143 B B 15_01B Undecided 605911 U00389 env 0 181 129 B B 15_01B Undecided 605912 U00390 env 0 181 129 B B 15_01B Undecided 605913 U00391 env 0 181 129 B B 15_01B Undecided 605914 U00392 env 0 181 129 B B 15_01B Undecided 605915 U00393 env 0 181 129 B B 15_01B Undecided 605916 U00394 env 0 181 129 B B 15_01B Undecided 605917 U00395 env 0 181 129 B B 15_01B Undecided 605918 U00396 env 0 181 129 B B 15_01B Undecided 605919 U00397 env 0 181 129 B B 15_01B Undecided 605920 U00398 env 0 181 129 B B 15_01B Undecided 606572 U03359 ltr 355 883 256 B B B Undecided 607268 U05388 env 0 163 111 B B 15_01B Undecided 607380 U05444 env 5 298 163 B B 03_AB Undecided 607382 U05445 env 5 301 163 B B 03_AB Undecided 632561 U19416 pol 0 297 231 F1 F 12_BF Undecided 632619 U19445 gag 0 311 298 F1 F 12_BF Undecided 699564 U21106 gag 0 289 265 D D B Undecided 840958 U16036 env 0 1054 611 B B 14_BG Undecided 887010 U14820 pol 0 117 108 B B B Undecided 887657 U14812 pol 0 117 108 B B 07_BC Undecided 887669 U14835 pol 0 117 108 B B B Undecided 887728 U14868 pol 1 204 177 B B 12_BF Undecided 887729 U14869 pol 0 117 108 B B B Undecided 901913 U20022 env 0 357 229 B B 15_01B Undecided 901929 U20030 env 1 349 226 B B 15_01B Undecided 901931 U20031 env 1 357 228 B B 15_01B Undecided 901941 U20036 env 1 352 228 B B 15_01B Undecided 901957 U20044 env 1 357 228 B B 15_01B Undecided

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