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Algorithms Prediction server Database query Output description Benchmark results

Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide

Multiple Substitution Correction Algorithm: Jukes-Cantor

All sites that include gaps were deleted.


Gene by Gene Subtype Prediction Summary (Download as an EXCEL file)

NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision
305500 L11484 env 9 265 157 A H 13_cpx Undecided
305502 L11485 env 9 281 157 A H 13_cpx Undecided
305504 L11486 env 9 280 156 A H 11_cpx Undecided
305530 L11500 env 1 287 158 G F 06_cpx Undecided
305679 L19627 env 0 222 153 D F 10_CD Undecided
327352 M73478 pol 2 177 77 D G 11_cpx Undecided
327776 M21138 5tat 0 63 57 B D B Undecided
5rev 0 63 50 D B Undecided
437342 L22939 nef 2923 3215 107 02_AG C 02_AG Undecided
437345 L23064 nef 3036 3328 107 02_AG C 02_AG Undecided
507760 U09667 env 0 903 523 H G H Undecided
572698 X80441 env 0 903 523 H G H Undecided
632569 U19420 pol 0 297 231 B D B Undecided
632641 U19456 gag 0 311 298 F1 B 07_BC Undecided
924316 U13457 env 0 279 138 A C A Undecided
924318 U13458 env 0 279 138 C K C Undecided
924324 U13461 env 0 276 138 C K C Undecided
924326 U13462 env 0 279 138 C K C Undecided
924467 U13534 env 0 270 138 D F D Undecided
1002564 U28672 env 0 390 259 04_cpx H 04_cpx Undecided
1144357 U33096 env 0 105 58 G B G Undecided
1144369 U33102 env 3 276 158 J F 06_cpx Undecided
1144375 U33105 env 0 102 55 H A H Undecided
1144377 U33106 env 0 102 55 H G 13_cpx Undecided
1150885 U43109 env 0 1486 855 A H 04_cpx Undecided
1150893 U43136 env 0 1549 852 A J 11_cpx Undecided
1226074 L76871 env 0 270 163 B F 05_DF Undecided
1226092 L76880 env 0 270 163 G K G Undecided
1226146 L76908 env 0 270 163 C F 12_BF Undecided
1429992 Z76246 gag 0 729 559 A H H Undecided
1429996 Z76249 gag 0 729 559 A H H Undecided
1429998 Z76250 gag 0 729 559 A H H Undecided
1430000 Z76251 gag 0 729 559 A H H Undecided
1430085 Z76294 gag 0 729 559 A H H Undecided
1430097 Z76300 gag 0 729 559 A H H Undecided
1430101 Z76302 gag 0 729 559 A H H Undecided
1438497 Z76733 gag 0 729 559 A H H Undecided
1478056 L39106 pol 1609 4621 2703 02_AG J 11_cpx Undecided
nef 8323 8944 246 H H Undecided
1495952 U27399 nef 2523 2806 102 D B D Undecided
1495967 U27419 nef 2556 2842 102 D B 07_BC Undecided
1515244 Z79527 gag 0 396 180 A 01_AE 01_AE Undecided
1515260 Z79535 gag 0 396 180 A 01_AE 01_AE Undecided
1527002 U59559 env 0 326 206 02_AG A 02_AG Undecided
1527004 U59560 env 0 329 206 02_AG A 02_AG Undecided
1527006 U59561 env 0 329 206 02_AG A 02_AG Undecided
1527024 U59570 env 0 326 206 02_AG B 02_AG Undecided
1527026 U59571 env 0 320 202 02_AG B B Undecided
1527034 U59575 env 0 329 203 02_AG B 02_AG Undecided
1575640 U69658 env 0 258 160 A F A Undecided
1620232 U61859 env 0 255 163 A J A Undecided
1620236 U61861 env 13 255 156 A H A Undecided
1620244 U61865 env 1 255 163 A J A Undecided
1622740 U45483 env 0 114 61 C B C Undecided
1622768 U45497 env 0 119 63 C B C Undecided
1622774 U45500 env 0 201 112 C F C Undecided
1763505 U76177 env 0 360 235 D J J Undecided
1854724 U69213 pol 1 288 277 A G 02_AG Undecided
1854739 U69221 pol 0 288 277 A G 02_AG Undecided
1854743 U69223 pol 0 288 277 A G 02_AG Undecided
1854747 U69225 pol 18 285 257 C F F Undecided
1854751 U69227 pol 1 288 277 A G G Undecided
1854755 U69229 pol 0 288 277 A G 02_AG Undecided
1854761 U69232 pol 0 288 277 C G 13_cpx Undecided
1854763 U69233 pol 0 288 277 A G 02_AG Undecided
1854791 U69247 pol 0 288 277 A G 02_AG Undecided
1854816 U69997 env 0 370 232 F2 K K Undecided
1854824 U70001 env 0 376 233 F G 04_cpx Undecided
1890936 U90202 env 0 337 206 02_AG A 02_AG Undecided
2078242 U88807 env 0 264 163 C J 10_CD Undecided
2109346 AF000472 env 0 345 212 02_AG A 02_AG Undecided
2109390 AF000494 pol 0 297 231 A G 02_AG Undecided
2228267 U58785 env 0 275 179 C F 12_BF Undecided
2228277 U58790 env 0 275 162 C F C Undecided
2228301 U58802 env 0 275 163 A H 11_cpx Undecided
2276254 X94386 env 11 849 464 B K 06_cpx Undecided
2290099 U84845 nef 2574 2857 102 B D B Undecided
2342795 U56355 gag 0 283 166 F1 K 12_BF Undecided
2342817 U56366 gag 0 224 166 A 01_AE 01_AE Undecided
2351781 U90933 nef 2797 3013 64 B 01_AE 15_01B Undecided
2462337 Y14358 env 6 281 163 06_cpx F G Undecided
2586734 AF025691 env 0 345 212 02_AG A 02_AG Undecided
2586794 AF025721 pol 0 297 231 A G 02_AG Undecided
2586830 AF025739 pol 0 297 231 A G 06_cpx Undecided
2586836 AF025742 pol 0 297 231 A G 02_AG Undecided
2641430 AF032167 env 0 204 137 A B 04_cpx Undecided
2641514 AF032209 env 0 273 163 02_AG A 02_AG Undecided
2920763 Z95457 env 0 599 316 H F 12_BF Undecided
2920764 Z95458 env 0 599 316 H F 12_BF Undecided
3064832 AF048265 env 0 174 62 A G K Undecided
3065128 AF048414 env 0 102 58 A C A Undecided
3065136 AF048418 env 0 102 58 A C A Undecided
3065138 AF048419 env 0 102 58 A G A Undecided
3065140 AF048420 env 0 102 58 A C A Undecided
3065144 AF048422 env 0 102 58 A G A Undecided
3065146 AF048423 env 0 102 58 A G A Undecided
3065148 AF048424 env 0 102 58 A C A Undecided
3065150 AF048425 env 0 102 58 A G A Undecided
3065154 AF048427 env 0 102 58 A G A Undecided
3065162 AF048431 env 0 102 58 A G A Undecided

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Copyrighted by Bio-Data Mining Lab, Department of Bioinformatics and Life Sciences, Soongsil University, Seoul, Korea