Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 305500 L11484 env 9 265 157 A H 13_cpx Undecided 305502 L11485 env 9 281 157 A H 13_cpx Undecided 305504 L11486 env 9 280 156 A H 11_cpx Undecided 305530 L11500 env 1 287 158 G F 06_cpx Undecided 305679 L19627 env 0 222 153 D F 10_CD Undecided 327352 M73478 pol 2 177 77 D G 11_cpx Undecided 327776 M21138 5rev 0 63 50 B D B Undecided 5tat 0 63 57 D B Undecided 437342 L22939 nef 2923 3215 107 02_AG C 02_AG Undecided 437345 L23064 nef 3036 3328 107 02_AG C 02_AG Undecided 507760 U09667 env 0 903 523 H G H Undecided 572698 X80441 env 0 903 523 H G H Undecided 632569 U19420 pol 0 297 231 B D B Undecided 632641 U19456 gag 0 311 298 F1 B 07_BC Undecided 924316 U13457 env 0 279 138 A C A Undecided 924318 U13458 env 0 279 138 C K C Undecided 924324 U13461 env 0 276 138 C K C Undecided 924326 U13462 env 0 279 138 C K C Undecided 924467 U13534 env 0 270 138 D F D Undecided 1002564 U28672 env 0 390 259 04_cpx H 04_cpx Undecided 1144357 U33096 env 0 105 58 G B G Undecided 1144369 U33102 env 3 276 158 J F 06_cpx Undecided 1144375 U33105 env 0 102 55 H A H Undecided 1144377 U33106 env 0 102 55 H G 13_cpx Undecided 1150885 U43109 env 0 1486 855 A H 04_cpx Undecided 1150893 U43136 env 0 1549 852 A J 11_cpx Undecided 1226074 L76871 env 0 270 163 B F 05_DF Undecided 1226092 L76880 env 0 270 163 G K G Undecided 1226146 L76908 env 0 270 163 C F 12_BF Undecided 1429992 Z76246 gag 0 729 559 A H H Undecided 1429996 Z76249 gag 0 729 559 A H H Undecided 1429998 Z76250 gag 0 729 559 A H H Undecided 1430000 Z76251 gag 0 729 559 A H H Undecided 1430085 Z76294 gag 0 729 559 A H H Undecided 1430097 Z76300 gag 0 729 559 A H H Undecided 1430101 Z76302 gag 0 729 559 A H H Undecided 1438497 Z76733 gag 0 729 559 A H H Undecided 1478056 L39106 pol 1609 4621 2703 02_AG J 11_cpx Undecided nef 8323 8944 246 H H Undecided 1495952 U27399 nef 2523 2806 102 D B D Undecided 1495967 U27419 nef 2556 2842 102 D B 07_BC Undecided 1515244 Z79527 gag 0 396 180 A 01_AE 01_AE Undecided 1515260 Z79535 gag 0 396 180 A 01_AE 01_AE Undecided 1527002 U59559 env 0 326 206 02_AG A 02_AG Undecided 1527004 U59560 env 0 329 206 02_AG A 02_AG Undecided 1527006 U59561 env 0 329 206 02_AG A 02_AG Undecided 1527024 U59570 env 0 326 206 02_AG B 02_AG Undecided 1527026 U59571 env 0 320 202 02_AG B B Undecided 1527034 U59575 env 0 329 203 02_AG B 02_AG Undecided 1575640 U69658 env 0 258 160 A F A Undecided 1620232 U61859 env 0 255 163 A J A Undecided 1620236 U61861 env 13 255 156 A H A Undecided 1620244 U61865 env 1 255 163 A J A Undecided 1622740 U45483 env 0 114 61 C B C Undecided 1622768 U45497 env 0 119 63 C B C Undecided 1622774 U45500 env 0 201 112 C F C Undecided 1763505 U76177 env 0 360 235 D J J Undecided 1854724 U69213 pol 1 288 277 A G 02_AG Undecided 1854739 U69221 pol 0 288 277 A G 02_AG Undecided 1854743 U69223 pol 0 288 277 A G 02_AG Undecided 1854747 U69225 pol 18 285 257 C F F Undecided 1854751 U69227 pol 1 288 277 A G G Undecided 1854755 U69229 pol 0 288 277 A G 02_AG Undecided 1854761 U69232 pol 0 288 277 C G 13_cpx Undecided 1854763 U69233 pol 0 288 277 A G 02_AG Undecided 1854791 U69247 pol 0 288 277 A G 02_AG Undecided 1854816 U69997 env 0 370 232 F2 K K Undecided 1854824 U70001 env 0 376 233 F G 04_cpx Undecided 1890936 U90202 env 0 337 206 02_AG A 02_AG Undecided 2078242 U88807 env 0 264 163 C J 10_CD Undecided 2109346 AF000472 env 0 345 212 02_AG A 02_AG Undecided 2109390 AF000494 pol 0 297 231 A G 02_AG Undecided 2228267 U58785 env 0 275 179 C F 12_BF Undecided 2228277 U58790 env 0 275 162 C F C Undecided 2228301 U58802 env 0 275 163 A H 11_cpx Undecided 2276254 X94386 env 11 849 464 B K 06_cpx Undecided 2290099 U84845 nef 2574 2857 102 B D B Undecided 2342795 U56355 gag 0 283 166 F1 K 12_BF Undecided 2342817 U56366 gag 0 224 166 A 01_AE 01_AE Undecided 2351781 U90933 nef 2797 3013 64 B 01_AE 15_01B Undecided 2462337 Y14358 env 6 281 163 06_cpx F G Undecided 2586734 AF025691 env 0 345 212 02_AG A 02_AG Undecided 2586794 AF025721 pol 0 297 231 A G 02_AG Undecided 2586830 AF025739 pol 0 297 231 A G 06_cpx Undecided 2586836 AF025742 pol 0 297 231 A G 02_AG Undecided 2641430 AF032167 env 0 204 137 A B 04_cpx Undecided 2641514 AF032209 env 0 273 163 02_AG A 02_AG Undecided 2920763 Z95457 env 0 599 316 H F 12_BF Undecided 2920764 Z95458 env 0 599 316 H F 12_BF Undecided 3064832 AF048265 env 0 174 62 A G K Undecided 3065128 AF048414 env 0 102 58 A C A Undecided 3065136 AF048418 env 0 102 58 A C A Undecided 3065138 AF048419 env 0 102 58 A G A Undecided 3065140 AF048420 env 0 102 58 A C A Undecided 3065144 AF048422 env 0 102 58 A G A Undecided 3065146 AF048423 env 0 102 58 A G A Undecided 3065148 AF048424 env 0 102 58 A C A Undecided 3065150 AF048425 env 0 102 58 A G A Undecided 3065154 AF048427 env 0 102 58 A G A Undecided 3065162 AF048431 env 0 102 58 A G A Undecided

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