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Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide

Multiple Substitution Correction Algorithm: Jukes-Cantor

All sites that include gaps were deleted.


Gene by Gene Subtype Prediction Summary (Download as an EXCEL file)

NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision
60087 Z11133 gag 0 224 164 G 04_cpx Undecided
60089 Z11135 gag 0 194 140 G 06_cpx Undecided
60113 X58780 nef 16 637 246 ? B B Undecided
ltr 305 637 256 B B Undecided
60140 X58781 5rev 21 93 59 ? D 05_DF Undecided
3rev 94 314 176 D D Undecided
env 97 296 90 B B Undecided
60228 X04415 gag 349 1867 963 A1DK A 03_AB Undecided
pol 1662 4671 2703 K 06_cpx Undecided
env 5798 8378 1587 D 10_CD Undecided
nef 8379 9009 246 A 02_AG Undecided
ltr 8677 9229 256 H H Undecided
266069 S56177 gag 0 200 126 B 14_BG Undecided
287718 X70627 pol 0 657 595 ? B B Undecided
288826 Z15181 env 0 102 57 B 10_CD Undecided
288839 Z15177 env 0 102 57 B 10_CD Undecided
290969 L16594 env 0 105 58 B C Undecided
290971 L16620 env 0 105 58 B C Undecided
290981 L16619 env 0 105 58 B C Undecided
291196 M98503 env 0 801 444 A A 11_cpx Undecided
291214 L16607 env 0 111 58 G B Undecided
305421 L11458 env 1 263 163 A A 11_cpx Undecided
305423 L11518 env 0 252 161 A A 11_cpx Undecided
305474 L11470 env 0 286 164 A A 13_cpx Undecided
305476 L11469 env 0 286 164 A A 13_cpx Undecided
305482 L11474 env 1 276 163 A A 11_cpx Undecided
305488 L11477 env 0 244 163 A A 11_cpx Undecided
305490 L11478 env 0 287 163 A A 11_cpx Undecided
305494 L11480 env 0 247 163 01_AE 01_AE 01_AE Undecided
305496 L11481 env 0 278 165 01_AE 01_AE 01_AE Undecided
305500 L11484 env 9 265 157 A H 13_cpx Undecided
305502 L11485 env 9 281 157 A H 13_cpx Undecided
305504 L11486 env 9 280 156 A H 11_cpx Undecided
305517 L11492 env 6 216 101 A A 02_AG Undecided
305521 L11494 env 0 252 163 A A 13_cpx Undecided
305530 L11500 env 1 287 158 G F 06_cpx Undecided
305532 L11501 env 0 272 163 G G 06_cpx Undecided
305534 L11502 env 1 264 157 G G 06_cpx Undecided
305535 L11503 env 0 229 152 G G 06_cpx Undecided
305555 L11515 env 0 234 160 U A 11_cpx Undecided
305557 L11514 env 1 240 162 U A 11_cpx Undecided
305561 L11516 env 0 226 117 D D D Undecided
305563 L11525 env 0 277 164 G G 06_cpx Undecided
305676 L19625 env 0 347 213 A A 02_AG Undecided
305679 L19627 env 0 222 153 D F 10_CD Undecided
305683 L19629 env 0 240 153 A A 02_AG Undecided
305896 L11756 gag 0 1477 963 AD H 06_cpx Undecided
305978 L11776 gag 0 1483 963 ACFG A 03_AB Undecided
306133 L11790 gag 0 1465 963 AGHU A 03_AB Undecided
306137 L11792 gag 0 1471 963 GH H H Undecided
325857 M98920 env 0 225 136 D D 10_CD Undecided
325859 M98921 env 0 258 148 D D 10_CD Undecided
325861 M98922 env 0 225 148 D D 10_CD Undecided
325982 L08683 pol 0 865 769 ? B B Undecided
326272 M91856 env 0 276 163 BF1 F 05_DF Undecided
326274 M91855 env 0 276 163 BF1 F 05_DF Undecided
326276 M91853 env 0 276 163 BF1 F 05_DF Undecided
326278 M91851 env 0 276 163 BF1 F 05_DF Undecided
326280 M91854 env 0 276 163 BF1 F 05_DF Undecided
326282 M91852 env 0 276 163 BF1 F 05_DF Undecided
326284 M91850 env 0 276 163 BF1 F 05_DF Undecided
326288 M91847 env 0 276 163 BF1 F 05_DF Undecided
326290 M91846 env 0 276 163 BF1 F 05_DF Undecided
326292 M91845 env 0 276 163 BF1 F 05_DF Undecided
326294 M91843 env 0 276 163 BF1 F 05_DF Undecided
326296 M91841 env 0 276 163 BF1 F 05_DF Undecided
326298 M91844 env 0 276 163 BF1 F 05_DF Undecided
326300 M91842 env 0 276 163 BF1 F 05_DF Undecided
326302 M91840 env 0 276 163 BF1 F 05_DF Undecided
327344 M73475 pol 2 180 77 A A 02_AG Undecided
327350 M73472 pol 2 177 77 AG 01_AE 01_AE Undecided
327352 M73478 pol 2 177 77 D G 11_cpx Undecided
327579 L07175 env 0 302 158 B B 12_BF Undecided
327776 M21138 5rev 0 63 50 B D B Undecided
5tat 0 63 57 D B Undecided
327777 AH003604 5rev 1897 1960 50 ? D B Undecided
5tat 1897 1960 57 D B Undecided
328305 M58246 ltr 289 854 256 B B B Undecided
328595 L06697 env 0 105 58 B C Undecided
328720 L01299 env 0 253 162 D D D Undecided
328987 M61455 env 0 102 57 B G Undecided
329031 M61483 env 0 100 53 B B Undecided
329163 M61554 env 0 105 58 B G Undecided
329175 M61560 env 0 102 58 B 15_01B Undecided
329387 K03347 env 57 2602 1585 U H 04_cpx Undecided
nef 2603 2709 50 C 02_AG Undecided
329392 M15896 vpu 0 179 70 A1GU G 02_AG Undecided
nef 2668 3296 246 01_AE 13_cpx Undecided
ltr 2957 3457 256 01_AE 11_cpx Undecided
345304 Z15182 env 0 105 58 C B Undecided
392379 U00404 env 1 106 58 G 14_BG Undecided
403901 U01513 env 0 180 129 B B 15_01B Undecided
403903 U01514 env 0 178 127 B B 15_01B Undecided
403905 U01515 env 0 178 127 B B 15_01B Undecided
403907 U01516 env 5 177 121 B B 15_01B Undecided
403909 U01517 env 0 178 127 B B 15_01B Undecided
403911 U01518 env 0 178 127 B B 15_01B Undecided
403913 U01519 env 0 174 123 B B 15_01B Undecided
403915 U01520 env 0 176 125 B B 15_01B Undecided
403917 U01521 env 0 191 134 B B 15_01B Undecided

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Copyrighted by Bio-Data Mining Lab, Department of Bioinformatics and Life Sciences, Soongsil University, Seoul, Korea