Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 487349 U08953 env 0 282 168 BF F 12_BF Undecided 1894988 U86550 gag 0 728 558 AC C 10_CD Undecided 1899108 U86774 5rev 13 85 59 A2C C A Undecided 1899114 U86775 5rev 72 144 59 A2C C A Undecided 2586838 AF025743 pol 0 297 231 U D 09_cpx Undecided 2827186 AF037316 gag 1 551 440 AF K F Undecided 2898041 AF030657 env 0 170 95 M B D Undecided 3114554 AF005495 ltr 8404 8953 256 BF1 F F Undecided 3287142 Y16028 vpr 561 863 147 O B 13_cpx Undecided 3288388 AJ006022 vpr 5152 5440 147 N G G Undecided 5305575 AF097694 5tat 1337 1548 185 02DO 01_AE 02_AG Undecided 5478675 AF155512 env 0 264 160 BF B 12_BF Undecided 5668910 AF076474 vpu 5426 5659 95 A1GHU D D Undecided 5668922 AF076475 vpr 4896 5186 147 F2KU F K Undecided 5932448 AF188337 pol 0 431 387 U K 03_AB Undecided 6018949 AF106396 gag 0 396 319 U G H Undecided 6643025 AF192135 vpu 5467 5700 95 A1GJ J H Undecided 8571090 AF212269 env 3 261 160 AG F G Undecided 9931089 AJ293865 5tat 5175 5386 185 06A1 K 06_cpx Undecided 11125116 AJ404197 env 0 576 347 AJ G J Undecided 11244673 AF199283 pol 0 539 484 U H 06_cpx Undecided 11244709 AF199301 pol 0 540 485 U A 01_AE Undecided 11761267 AB043899 env 1100 1293 83 BC B 15_01B Undecided 12407064 AJ404323 vpu 1646 1879 95 01GHJKU H 11_cpx Undecided 13506566 AY010486 pol 0 672 617 U A K Undecided 14290019 AF377958 gag 0 1485 963 AF2G H K Undecided 14290028 AF377959 5tat 5023 5234 185 18_cpx H K Undecided 14530226 AF286236 vif 4535 5114 522 U K H Undecided 15866237 AF410454 vpu 89 322 95 U A 13_cpx Undecided 16151146 AY050184 pol 0 525 470 CJU K 06_cpx Undecided 16755645 AF407418 nef 8447 9026 207 O K K Undecided 17352343 AY046058 vif 4311 4890 522 U H J Undecided 17981618 AF457101 gag 2 1491 963 U K J Undecided ltr 8247 8784 256 K 03_AB Undecided 18495856 AJ419444 pol 0 1244 1109 AG G 02_AG Undecided 21617256 AF517410 pol 0 987 859 U H 06_cpx Undecided 21685655 AF470753 pol 0 945 817 BF F 12_BF Undecided 21686081 AF470990 env 0 104 57 BF B C Undecided 22450717 AF481785 env 0 601 346 U J A Undecided 22596553 AF457088 5tat 5004 5215 185 A1A2D A 16_A2D Undecided 22750474 AF458247 pol 0 836 790 A1A2 H J Undecided 23344682 AF541844 pol 0 288 222 U 01_AE 01_AE Undecided 23394927 AF490974 5tat 5046 5257 185 01B G 14_BG Undecided 24062041 AY140641 pol 8 1096 890 02A1 K 06_cpx Undecided 25166730 AF484488 vpr 4760 5060 147 A1D K K Undecided 25360373 AY146252 gag 0 639 538 U C J Undecided 26023926 AF454487 env 164 528 239 BF1 K 12_BF Undecided 27549728 AF527283 pol 0 571 516 BC K K Undecided 27549860 AF527225 pol 0 297 231 BC K 09_cpx Undecided 27549988 AF527352 pol 0 297 231 FU F D Undecided 28863980 AY204260 env 0 234 156 U F F Undecided 28864058 AY204299 env 0 331 215 U B K Undecided 33088409 AY248371 gag 0 471 201 U H H Undecided 34330090 AY231275 pol 5 1419 1331 10A1 J 10_CD Undecided 34577148 AY371704 pol 0 297 231 U A 02_AG Undecided 38491702 AY371145 5tat 5028 5239 185 0102A G 01_AE Undecided 38491732 AY371148 pol 1274 4286 2703 0102DF J 06_cpx Undecided 38491850 AY371161 vpr 4760 5054 147 AHJU F 09_cpx Undecided 38491889 AY371165 5tat 5028 5239 185 01A A G Undecided vpu 5276 5509 95 A 01_AE Undecided 38491908 AY371167 5tat 5022 5233 185 01AF2U A 01_AE Undecided 40456896 AY492580 gag 0 474 443 BD D 05_DF Undecided 42405385 AY524175 pol 0 1143 996 U K A Undecided 47027387 AY532635 ltr 8560 8938 256 N K 06_cpx Undecided 47118239 AY536235 vpr 5014 5305 147 BF F F Undecided 50346510 AY667690 env 0 366 296 BD D B Undecided 51950709 AY586540 5tat 5134 5345 185 18_cpx J K Undecided 56266784 AY772961 pol 1293 1570 153 AD A 01_AE Undecided 57233049 AY707072 env 0 366 296 GJ G 11_cpx Undecided 58700361 AY887043 pol 0 697 638 01B 01_AE 01_AE Undecided 59803632 AY904583 pol 0 291 231 01B B 01_AE Undecided 62735701 AY887352 env 0 1008 703 AD J A Undecided 62735750 AY887369 env 0 1008 703 AD J A Undecided 62823760 AY924460 gag 0 408 377 A2C H H Undecided 62904274 AY931422 env 0 675 350 AC H J Undecided 62946400 AY945709 nef 7999 8623 246 ACD F 10_CD Undecided 68522143 DQ093606 vpu 5491 5724 95 AC A A Undecided 71801475 DQ122071 nef 0 654 246 U K K Undecided ltr 322 654 256 J J Undecided 71801477 DQ122072 nef 0 654 246 U K K Undecided ltr 322 654 256 J J Undecided 71801479 DQ122073 nef 0 654 246 U K K Undecided 71801481 DQ122074 nef 0 654 246 U K K Undecided ltr 322 654 256 J J Undecided 72154087 DQ125372 env 0 156 105 BF F B Undecided 72154091 DQ125374 env 0 156 105 BF F B Undecided 73810382 DQ113025 pol 0 1259 1124 20_BG B 03_AB Undecided 73810778 DQ113223 pol 0 1278 1143 20_BG J 03_AB Undecided 73811082 DQ113375 pol 0 1244 1109 09U H 06_cpx Undecided 78192368 DQ220798 pol 0 631 573 0218 K 04_cpx Undecided 84618387 AM085033 gag 0 501 467 0102 01_AE 04_cpx Undecided 88193322 AM086490 env 5 556 349 U K 12_BF Undecided 109894121 DQ659735 nef 0 642 246 AE 01_AE J Undecided 110809904 DQ826726 5tat 5037 5248 185 25_cpx K 02_AG Undecided 113968130 DQ539796 pol 0 294 231 BDF D D Undecided 117643940 EF029066 vif 4925 5504 522 U K 05_DF Undecided 117643960 EF029068 gag 685 2179 963 U J K Undecided vpu 5966 6205 95 F 11_cpx Undecided 117643970 EF029069 vpu 5966 6205 95 U F 11_cpx Undecided 117950106 EF064519 pol 0 1028 899 02G K 06_cpx Undecided

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