Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 632619 U19445 gag 0 311 298 F1 F 12_BF Undecided 699564 U21106 gag 0 289 265 D D B Undecided 1469600 U53633 pol 0 297 231 B B D Undecided 2585985 AF024025 gag 0 290 91 B B D Undecided 3319663 AJ228148 env 0 254 162 F1 F 12_BF Undecided 4105862 AF051459 env 0 171 107 G G F Undecided 4151502 AF098096 env 0 216 108 C C F Undecided 6651464 AF193275 vpu 5457 5690 95 A1 A 13_cpx Undecided 11066507 AF264277 pol 0 298 232 B B D Undecided 11245728 AY007766 env 0 143 92 C C B Undecided 13506374 AY010390 pol 0 297 231 A A 03_AB Undecided 14587878 AB050918 env 22 264 152 C C J Undecided 14669671 AF388991 nef 0 207 72 C C 11_cpx Undecided 15912130 AY047475 pol 0 297 231 B B 09_cpx Undecided 18071994 AF454538 pol 0 543 488 A1 A 01_AE Undecided 19073105 AF455639 pol 0 580 525 G G 09_cpx Undecided 21552673 AJ318392 env 0 508 345 J J J Undecided 22035072 AY049695 pol 0 288 222 B B D Undecided 27549838 AF527203 pol 0 297 231 B B 12_BF Undecided 27550000 AF527363 pol 0 283 231 F1 F 12_BF Undecided 27848292 AJ490787 env 0 591 356 D D D Undecided 34577150 AY371705 pol 0 297 231 A1 A 09_cpx Undecided 34851012 AY366942 env 0 226 152 F F 12_BF Undecided 34980121 AY372235 env 0 532 346 A A 11_cpx Undecided 37694970 AY397382 env 0 291 172 A A 02_AG Undecided 40455908 AY429200 pol 0 297 231 A2 A 16_A2D Undecided 40455910 AY429201 pol 0 297 231 A2 A 16_A2D Undecided 40455912 AY429202 pol 0 297 231 A2 A 16_A2D Undecided 40455914 AY429203 pol 0 297 231 A2 A 16_A2D Undecided 40455916 AY429204 pol 0 297 231 A2 A 16_A2D Undecided 40455918 AY429205 pol 0 297 231 A2 A 16_A2D Undecided 40455932 AY429212 pol 0 297 231 A2 A 16_A2D Undecided 45357030 AY535910 pol 0 299 233 B B D Undecided 50346466 AY667668 env 0 366 296 K K 05_DF Undecided 50402459 AY665494 env 0 342 212 K K K Undecided 50981482 AY676587 gag 110 573 246 H H H Undecided 55274052 AY622876 pol 0 162 68 A A 01_AE Undecided 55702133 AY796792 pol 0 297 231 B B B Undecided 55703771 AY797623 pol 0 296 231 B B D Undecided 55705421 AY798452 pol 0 297 231 B B D Undecided 56121642 AY661753 pol 0 288 277 J J J Undecided 56121662 AY661763 pol 0 288 277 J J J Undecided 56541674 AJ630570 env 1 589 347 H H H Undecided 63095791 AY900944 pol 0 282 216 F1 F K Undecided 67034246 DQ059721 pol 0 523 477 F1 F 05_DF Undecided 71060485 AJ850904 ltr 368 756 256 F1 F 05_DF Undecided 80972364 DQ187221 env 0 101 54 A A 02_AG Undecided 85662809 AJ877595 env 0 613 359 J J J Undecided 89519939 DQ409600 pol 0 622 567 A1 A 01_AE Undecided 122912380 EF119959 5rev 1 74 56 B B 05_DF Undecided 126092592 EF420120 env 0 293 179 F1 F 12_BF Undecided 134252127 EF063076 env 0 316 181 G G 06_cpx Undecided 149126362 EF614151 vpr 4752 5043 147 J J 06_cpx Undecided 156628531 EU068368 pol 0 917 848 J J J Undecided 158143519 EU158728 gag 0 594 435 C C 07_BC Undecided 167427672 EU386251 pol 0 697 598 D D D Undecided 167886819 EU384054 nef 223 459 70 B B 08_BC Undecided 167886825 EU384057 nef 223 459 70 B B 08_BC Undecided 167886827 EU384058 nef 223 459 70 B B 08_BC Undecided 167886829 EU384059 nef 223 459 70 B B 08_BC Undecided 167886831 EU384060 nef 223 459 70 B B 08_BC Undecided 167886841 EU384065 nef 223 459 70 B B 08_BC Undecided 167886843 EU384066 nef 223 459 70 B B 08_BC Undecided 167886849 EU384069 nef 223 459 70 B B 08_BC Undecided 167886851 EU384070 nef 223 459 70 B B 08_BC Undecided 167886853 EU384071 nef 223 459 70 B B 08_BC Undecided 167886855 EU384072 nef 223 459 70 B B 08_BC Undecided 167886857 EU384073 nef 223 459 70 B B 08_BC Undecided 167886859 EU384074 nef 223 459 70 B B 08_BC Undecided 167886863 EU384076 nef 223 459 70 B B 08_BC Undecided 167886865 EU384077 nef 223 459 70 B B 08_BC Undecided 167886885 EU384087 nef 223 451 64 B B 08_BC Undecided 167886889 EU384089 nef 223 451 64 B B D Undecided 167886893 EU384091 nef 223 452 64 B B 01_AE Undecided 167886906 EU384097 nef 223 452 64 B B 01_AE Undecided 167886912 EU384100 nef 223 412 63 B B 10_CD Undecided 167886914 EU384101 nef 223 451 64 B B 08_BC Undecided 167886970 EU384129 nef 223 460 65 B B B Undecided 167886972 EU384130 nef 223 460 65 B B 08_BC Undecided 196128380 EU836393 5tat 0 58 52 A1 A G Undecided 197205068 EU875266 env 241 406 59 D D 10_CD Undecided 197205308 EU875112 5tat 0 58 52 A1 A 01_AE Undecided 197205309 EU875113 5tat 0 58 52 A1 A 01_AE Undecided 197205310 EU875114 5tat 0 58 52 A1 A 01_AE Undecided 197205311 EU875115 5tat 0 58 52 A1 A 01_AE Undecided 197205312 EU875116 5tat 0 58 52 A1 A 01_AE Undecided 197205313 EU875117 5tat 0 58 52 A1 A 01_AE Undecided 197205314 EU875118 5tat 0 58 52 A1 A 01_AE Undecided 197205315 EU875119 5tat 0 58 52 A1 A 01_AE Undecided 197205316 EU875120 5tat 0 58 52 A1 A 01_AE Undecided 197205317 EU875121 5tat 0 58 52 A1 A 01_AE Undecided 197205318 EU875122 5tat 0 58 52 A1 A 01_AE Undecided 197205319 EU875123 5tat 0 58 52 A1 A 01_AE Undecided 197205320 EU875124 5tat 0 58 52 A1 A 01_AE Undecided 255519531 AB480300 ltr 0 631 256 F1 F H Undecided

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