Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 305530 L11500 env 1 287 158 G F 06_cpx Undecided 327352 M73478 pol 2 177 77 D G 11_cpx Undecided 327776 M21138 5tat 0 63 57 B D B Undecided 632641 U19456 gag 0 311 298 F1 B 07_BC Undecided 924316 U13457 env 0 279 138 A C A Undecided 924318 U13458 env 0 279 138 C K C Undecided 924324 U13461 env 0 276 138 C K C Undecided 924326 U13462 env 0 279 138 C K C Undecided 1144357 U33096 env 0 105 58 G B G Undecided 1144377 U33106 env 0 102 55 H G 13_cpx Undecided 1226092 L76880 env 0 270 163 G K G Undecided 1226146 L76908 env 0 270 163 C F 12_BF Undecided 1495967 U27419 nef 2556 2842 102 D B 07_BC Undecided 1527024 U59570 env 0 326 206 02_AG B 02_AG Undecided 1575640 U69658 env 0 258 160 A F A Undecided 1622740 U45483 env 0 114 61 C B C Undecided 1622768 U45497 env 0 119 63 C B C Undecided 1622774 U45500 env 0 201 112 C F C Undecided 1763505 U76177 env 0 360 235 D J J Undecided 2290099 U84845 nef 2574 2857 102 B D B Undecided 2462337 Y14358 env 6 281 163 06_cpx F G Undecided 2641430 AF032167 env 0 204 137 A B 04_cpx Undecided 3064832 AF048265 env 0 174 62 A G K Undecided 3065128 AF048414 env 0 102 58 A C A Undecided 3065136 AF048418 env 0 102 58 A C A Undecided 3065140 AF048420 env 0 102 58 A C A Undecided 3065148 AF048424 env 0 102 58 A C A Undecided 3065164 AF048432 env 0 102 58 A C A Undecided 3065166 AF048433 env 0 102 58 A C A Undecided 3065168 AF048434 env 0 102 58 A C A Undecided 3065170 AF048435 env 0 102 58 A C A Undecided 3065186 AF048443 env 0 99 55 A G A Undecided 3065194 AF048447 env 0 102 58 A C A Undecided 3065272 AF048486 env 0 102 58 A C A Undecided 3065290 AF048495 env 0 102 58 A C A Undecided 3065298 AF048499 env 0 102 58 A C A Undecided 3065302 AF048501 env 0 102 58 A C A Undecided 3065314 AF048507 env 0 102 58 A C A Undecided 3065322 AF048511 env 0 102 58 A C A Undecided 3065338 AF048519 env 0 102 58 A C A Undecided 3065342 AF048521 env 0 102 58 A C A Undecided 3183772 AJ228289 gag 0 340 313 D H D Undecided 3204206 AJ006745 env 0 274 183 D K 10_CD Undecided 3286832 AJ225680 env 0 241 162 A H A Undecided 3548998 AF082361 env 0 105 58 B C B Undecided 3603203 AF025635 5tat 0 211 185 A 01_AE A Undecided 3603227 AF025647 5tat 0 211 185 A 01_AE A Undecided 4151476 AF098083 env 0 219 111 C B C Undecided 5163258 AF125286 pol 0 267 207 H K K Undecided 5532660 AF153131 env 0 105 58 C B C Undecided 5532670 AF153136 env 0 105 58 C B C Undecided 5532700 AF153151 env 0 105 58 C B C Undecided 5532756 AF153179 env 0 105 58 C B C Undecided 6093146 AJ249237 vif 4249 4831 522 F2 H 13_cpx Undecided 6424498 AF102277 pol 0 297 231 B D B Undecided 6424499 AF102278 pol 0 297 231 B D B Undecided 6435150 AF165550 env 0 366 296 B D 12_BF Undecided 6579004 AF210500 pol 0 297 231 B D B Undecided 7208045 AF125629 env 0 477 302 G F 06_cpx Undecided 7532643 AJ286476 gag 0 599 555 02_AG H 09_cpx Undecided 7649465 AJ286137 pol 51 1820 1518 02_AG H 06_cpx Undecided 7649471 AJ286140 pol 1 1571 1420 02_AG K 06_cpx Undecided 7689135 AF231043 env 0 105 58 A C 09_cpx Undecided 7767340 AF144854 gag 0 311 211 H J H Undecided 8895233 AF204297 pol 0 297 231 B D B Undecided 9756141 AJ286985 pol 0 1572 1420 02_AG J 06_cpx Undecided 9756145 AJ286987 pol 0 1572 1420 02_AG J K Undecided 9756159 AJ286994 pol 0 1572 1420 02_AG J 06_cpx Undecided 9886900 AF212277 pol 1211 2543 1096 02_AG H 06_cpx Undecided 9937108 AF188900 env 0 280 164 A H A Undecided 9937112 AF188902 env 0 278 163 A J 10_CD Undecided 11093712 AF282160 pol 0 564 509 02_AG J 02_AG Undecided 11244697 AF199295 pol 0 297 231 11_cpx J 11_cpx Undecided 12656557 AF315769 pol 0 618 560 04_cpx F 04_cpx Undecided 12666398 AJ302195 pol 0 297 231 B D B Undecided 13448745 AF354011 pol 0 297 231 A 01_AE A Undecided 14039063 AF219261 5tat 0 82 76 A1 01_AE 14_BG Undecided 14290001 AF377956 nef 7967 8596 246 F2 K F Undecided 14537709 AF323219 gag 0 281 54 B D B Undecided 14571890 AF286240 pol 913 3901 2703 A2 H 16_A2D Undecided 14585764 AY036334 pol 0 297 231 10_CD A 09_cpx Undecided 14585766 AY036335 pol 0 297 231 10_CD A 09_cpx Undecided 14585770 AY036337 pol 0 297 231 10_CD A 09_cpx Undecided 14585772 AY036338 pol 0 297 231 10_CD A 09_cpx Undecided 14585774 AY036339 pol 0 297 231 10_CD A 09_cpx Undecided 14585776 AY036340 pol 0 297 231 10_CD A 09_cpx Undecided 14585780 AY036342 pol 0 297 231 10_CD 01_AE 09_cpx Undecided 14585782 AY036343 pol 0 297 231 10_CD H 10_CD Undecided 14585784 AY036345 pol 0 297 231 10_CD A 10_CD Undecided 15054665 AF286254 nef 2586 2792 64 A2 C A Undecided 15192225 AY036272 pol 0 297 231 B F 07_BC Undecided 15429678 AF383423 env 0 260 153 D F A Undecided 15429680 AF383424 env 0 260 153 D F A Undecided 15429696 AF383432 env 0 260 153 D F A Undecided 15429698 AF383433 env 0 260 153 D F D Undecided 15429710 AF383439 env 0 261 153 D F A Undecided 15429728 AF383448 env 0 230 153 D F 12_BF Undecided 15429730 AF383449 env 0 230 153 D F A Undecided 15429742 AF383455 env 0 230 153 D F 12_BF Undecided 15429744 AF383456 env 0 230 153 D F 12_BF Undecided

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