Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 1556507 U70276 gag 1 181 128 K 06_cpx Undecided 1667437 U70613 env 0 105 58 J F Undecided 4151461 AF096350 env 0 350 283 J J Undecided 7542810 AF247924 pol 0 467 447 B 03_AB Undecided 7542818 AF247928 pol 0 443 424 B 12_BF Undecided 10944816 AJ297118 pol 0 270 204 J J Undecided 10944864 AJ297144 pol 0 616 561 J B Undecided 16225600 AF418654 pol 0 605 550 J J Undecided 32185492 AY213304 pol 2 620 561 K 06_cpx Undecided 32185601 AY213361 pol 3 571 513 H 08_BC Undecided 32185725 AY213423 pol 0 571 516 H C Undecided 32185811 AY213466 pol 0 571 516 H 08_BC Undecided 32185831 AY213476 pol 0 570 515 H 08_BC Undecided 32483501 AY313396 pol 0 571 516 K F Undecided 37693851 AY193980 5tat 0 144 124 J 03_AB Undecided 37693857 AY193983 5tat 0 144 124 G 14_BG Undecided 37693859 AY193984 5tat 0 144 124 G 14_BG Undecided 37693869 AY193989 5tat 0 144 124 G 14_BG Undecided 37693881 AY193995 5tat 0 144 124 G 14_BG Undecided 37693883 AY193996 5tat 0 115 96 H 04_cpx Undecided 37693889 AY193999 5tat 0 144 124 G 14_BG Undecided 37693917 AY194013 5tat 0 144 124 H D Undecided 37693939 AY194024 5tat 0 115 96 H 04_cpx Undecided 37693951 AY194030 5tat 0 144 124 H B Undecided 37693953 AY194031 5tat 0 144 124 H 04_cpx Undecided 37693955 AY194032 5tat 0 144 124 J J Undecided 37693959 AY194034 5tat 0 144 124 H H Undecided 37693961 AY194035 5tat 0 144 124 K 16_A2D Undecided 37693963 AY194036 5tat 0 144 124 K 16_A2D Undecided 37693965 AY194037 5tat 0 135 115 H H Undecided 37693967 AY194038 5tat 0 144 124 H H Undecided 37693969 AY194039 5tat 0 144 124 K 16_A2D Undecided 37693973 AY194041 5tat 0 144 124 J H Undecided 37693977 AY194043 5tat 0 144 124 K 16_A2D Undecided 37693979 AY194044 5tat 0 144 124 H H Undecided 37693984 AY194047 5tat 0 144 124 H H Undecided 37693991 AY194053 5tat 0 135 115 H H Undecided 37720743 AY125427 gag 0 265 243 ? J 11_cpx Undecided 37720753 AY125432 gag 0 265 243 ? J 06_cpx Undecided 37720755 AY125433 gag 0 265 243 ? J 06_cpx Undecided 45645048 AY562433 pol 0 573 518 ? H 16_A2D Undecided 51104138 AY643196 pol 0 297 231 ? D D Undecided 51104280 AY643267 pol 0 652 594 K B Undecided 51895747 AY680653 pol 0 213 198 J J Undecided 52547085 AY610982 ltr 2 592 222 ? K 04_cpx Undecided 58978994 AY904680 pol 0 708 649 J 11_cpx Undecided 63096772 AY901435 pol 0 570 515 K F Undecided 71392181 DQ070713 pol 3 554 496 K B Undecided 71392197 DQ070721 pol 0 592 537 K F Undecided 87246732 DQ323312 env 0 336 212 J 11_cpx Undecided 91753910 AB256413 ltr 310 378 54 ? B B Undecided 91754033 AB256054 ltr 38 111 59 ? F F Undecided 110613604 DQ465227 pol 0 1535 1391 ? J 06_cpx Undecided 110613613 DQ465234 pol 0 1532 1391 ? K 06_cpx Undecided 110734835 DQ682714 pol 0 666 565 K 04_cpx Undecided 110734851 DQ682722 pol 0 666 565 K 06_cpx Undecided 110734853 DQ682723 pol 1 664 562 K 04_cpx Undecided 111434201 DQ825473 env 0 102 57 H 06_cpx Undecided 115542234 DQ984218 env 0 105 58 J J Undecided 115542245 DQ984221 env 0 105 58 ? H 02_AG Undecided 116272721 DQ876040 pol 0 288 222 J F Undecided 116272845 DQ876102 pol 0 288 222 J H Undecided 116273096 DQ876227 pol 0 288 222 J 06_cpx Undecided 116274040 DQ876701 pol 0 288 222 H H Undecided 116275304 DQ877335 pol 0 288 222 H H Undecided 116275532 DQ877450 pol 0 288 222 H H Undecided 116275836 DQ877602 pol 0 288 222 H 04_cpx Undecided 116275958 DQ877663 pol 0 288 222 F 12_BF Undecided 116281855 DQ880744 pol 0 630 572 K 06_cpx Undecided 119394287 EF178312 vpu 5523 5644 52 ? 01_AE 03_AB Undecided 119394294 EF178319 env 5548 7994 1533 ? B B Undecided 119394305 EF178330 gag 113 1604 941 ? B B Undecided 119394311 EF178336 pol 2011 4423 2273 ? B B Undecided 119394332 EF178357 env 5577 7925 1455 ? B 14_BG Undecided 119394343 EF178368 env 5605 8171 1578 ? B B Undecided 119394352 EF178377 pol 1462 4473 2702 ? B B Undecided 119394354 EF178379 env 5439 7840 1302 ? B 03_AB Undecided 119394361 EF178386 env 6057 8128 1259 ? B B Undecided 119394374 EF178399 env 6430 8134 1035 ? B B Undecided 119394393 EF178418 env 5548 7949 1270 ? B B Undecided 119394400 EF178425 gag 791 2295 960 ? B B Undecided 121073587 EF116765 pol 0 300 234 K 02_AG Undecided 125745480 EF376457 pol 0 297 231 J 13_cpx Undecided 125745482 EF376458 pol 0 297 231 J 13_cpx Undecided 134023333 EF449866 pol 0 887 766 ? J 06_cpx Undecided 134023405 EF449902 pol 0 887 763 ? K 04_cpx Undecided 134143379 EF447487 pol 2 229 219 ? A A Undecided 134143849 EF447723 pol 2 138 96 ? H H Undecided 134143941 EF447769 pol 0 169 105 J 11_cpx Undecided 134145377 EF448487 pol 0 609 552 H H Undecided 134145541 EF448569 pol 0 629 571 K 04_cpx Undecided 134145819 EF448708 pol 0 617 559 K 04_cpx Undecided 134146020 EF448809 pol 0 589 534 F K Undecided 134146473 EF449038 pol 0 623 566 K 04_cpx Undecided 134146693 EF449148 pol 1 619 560 K 04_cpx Undecided 134146709 EF449156 pol 0 630 572 J 06_cpx Undecided 134147070 EF449337 pol 0 630 572 K 04_cpx Undecided 134147106 EF449355 pol 18 628 553 ? B B Undecided 148925007 EF563777 pol 0 1020 792 ? J G Undecided 149999564 EF380385 ltr 0 562 199 G 02_AG Undecided

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