Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60228 X04415 pol 1662 4671 2703 A1DK K 06_cpx Undecided 424168 L22083 gag 0 1456 963 A2C H H Undecided 463057 L20587 vpr 5613 5906 147 O G G Undecided vpu 6127 6367 95 K 06_cpx Undecided 469239 L20571 vpr 5588 5890 147 O J 13_cpx Undecided 5tat 5871 6079 185 F F Undecided nef 8891 9518 244 H 06_cpx Undecided 492871 A07116 pol 1662 4671 2703 A1DK K 06_cpx Undecided 1171183 U43102 env 0 871 504 U J 13_cpx Undecided 1899119 U86776 gag 173 1658 963 A2C H H Undecided 1899122 U86777 gag 176 1661 963 A2C H 04_cpx Undecided 1899128 U86780 gag 168 1653 963 A2C H H Undecided 2944148 U92049 pol 1280 4292 2703 A1C J 11_cpx Undecided 3287076 Y16018 pol 0 87 87 O J 10_CD Undecided 5tat 844 1052 179 H 04_cpx Undecided 3287081 Y16019 pol 0 87 87 O H H Undecided 3287102 Y16020 pol 0 87 87 O H H Undecided 3287107 Y16021 pol 0 87 87 O H H Undecided vpu 1087 1330 95 K 06_cpx Undecided 3287112 Y16022 vpr 561 854 147 O G G Undecided vpu 1077 1315 92 A A Undecided 3287117 Y16023 pol 0 87 87 O H H Undecided vpu 1087 1327 95 K K Undecided 3287122 Y16024 pol 0 87 87 O J 06_cpx Undecided 3287127 Y16025 pol 0 87 87 O H H Undecided 3287132 Y16026 pol 0 87 87 O H H Undecided vpr 561 863 147 J 13_cpx Undecided 3287142 Y16028 pol 0 87 87 O H H Undecided vpu 1066 1330 95 K 06_cpx Undecided 3287147 Y16029 pol 0 87 87 O H H Undecided vpu 1087 1330 95 K 06_cpx Undecided 3287158 Y16030 pol 0 87 87 O H H Undecided vpu 1086 1324 92 K A Undecided 3287163 Y16031 vpu 1085 1321 95 O K 06_cpx Undecided 3288388 AJ006022 vpu 5658 5906 95 N G 13_cpx Undecided ltr 8675 9174 256 K J Undecided 3676481 AF056185 vif 647 1226 522 A1GU J 06_cpx Undecided 4539033 AJ237565 pol 2094 5106 2703 A1DHK K 06_cpx Undecided 4995258 AJ237809 env 0 2412 1581 AJK K 04_cpx Undecided 5531651 AF055729 5tat 1337 1548 185 02DO K D Undecided 5668910 AF076474 pol 1447 4456 2703 A1GHU J H Undecided vif 4400 4979 522 J H Undecided 5tat 5189 5400 185 J K Undecided env 5576 8117 1587 K 06_cpx Undecided 5668922 AF076475 pol 1422 4434 2703 F2KU K K Undecided 5tat 5166 5377 185 J 13_cpx Undecided env 5557 8188 1586 K K Undecided 5763673 AJ239083 pol 1289 4301 2703 02O J 06_cpx Undecided 5932448 AF188337 pol 0 431 387 U K 03_AB Undecided 6103511 AF147953 env 0 239 114 O J 13_cpx Undecided 6466838 AF184155 pol 1300 4312 2694 02A J 06_cpx Undecided 6643025 AF192135 pol 1474 4483 2703 A1GJ K 11_cpx Undecided vpr 4945 5236 147 K 06_cpx Undecided vpu 5467 5700 95 J H Undecided env 5617 8176 1586 J J Undecided ltr 8474 9083 256 J 04_cpx Undecided 7320841 AJ276694 env 0 1237 695 U J J Undecided 7320843 AJ276695 env 0 1234 702 U J J Undecided 7321133 AJ276595 pol 1389 4422 2703 02C J 06_cpx Undecided 8050678 AF247519 pol 1232 2564 1096 DF1 K 05_DF Undecided 8133145 AF268334 pol 0 435 287 AJ K D Undecided 8920151 AJ271370 vpu 5655 5853 95 N G G Undecided ltr 8618 9045 256 G 11_cpx Undecided 9756183 AJ287006 pol 0 1572 1420 KU K 06_cpx Undecided 9756215 AJ287022 pol 3 1572 1420 AG J 06_cpx Undecided 9756227 AJ287028 pol 0 1572 1420 KU K K Undecided 9756233 AJ287031 pol 3 1572 1420 U H K Undecided 9756237 AJ287033 pol 0 1572 1420 GK K 06_cpx Undecided 9843683 AJ296655 pol 0 1044 865 ACDJ H 08_BC Undecided 9929196 AJ298634 env 0 525 359 AJ J J Undecided 9931089 AJ293865 pol 1427 4436 2703 06A1 J 06_cpx Undecided ltr 8425 8757 256 H 04_cpx Undecided 11124712 AJ401036 env 0 2528 1587 JU J 11_cpx Undecided 11124718 AJ401039 env 0 2517 1588 U J 11_cpx Undecided 11124726 AJ401043 env 0 2556 1588 U K 06_cpx Undecided 11124728 AJ401044 env 0 2589 1587 U H 04_cpx Undecided 11124732 AJ401046 env 0 2531 1588 AJ J J Undecided 11125046 AJ404163 env 0 583 346 U J 13_cpx Undecided 11125558 AJ404259 gag 0 623 573 U J H Undecided 11244671 AF199282 pol 0 540 485 U J 06_cpx Undecided 12407062 AJ404322 pol 0 675 652 01GHJKU J 11_cpx Undecided 12407064 AJ404323 vif 604 1183 522 01GHJKU H 13_cpx Undecided 12407072 AJ404325 pol 1298 4304 2703 27_cpx J 13_cpx Undecided 13172682 AF316857 vpr 518 820 147 O G 14_BG Undecided 13172688 AF316858 vpr 518 820 147 O J 13_cpx Undecided 5tat 801 1009 185 H H Undecided vpu 1044 1284 95 K 06_cpx Undecided 13172694 AF316859 vpu 1044 1284 95 O K 06_cpx Undecided 13172700 AF316860 5tat 801 1009 182 O D D Undecided vpu 1044 1284 95 K K Undecided 13172706 AF316861 vpu 1044 1290 95 O K 06_cpx Undecided 13172712 AF316862 vpu 1037 1277 95 O K K Undecided 13183948 AY017451 pol 0 1023 895 GHK H H Undecided 13310301 AF330760 pol 0 735 675 BF K 06_cpx Undecided 13310342 AF330781 pol 0 690 635 AU J 04_cpx Undecided 13506390 AY010398 pol 0 297 231 U K K Undecided 13506430 AY010418 pol 0 297 231 U K K Undecided 13506590 AY010498 pol 0 672 617 U K K Undecided 13506592 AY010499 pol 0 672 617 U K 06_cpx Undecided 13560259 AB052867 pol 2097 5124 2703 02A1 J 06_cpx Undecided

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