Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 927044 L41177 env 0 255 160 J J J Undecided 927045 L41179 gag 0 412 195 J J J Undecided 927046 L41176 env 0 255 160 J J J Undecided 927047 L41178 gag 0 412 195 J J J Undecided 1144365 U33100 env 1 297 181 J J J Undecided 3288214 AJ228142 env 0 255 163 K K K Undecided 4336328 AF082394 gag 112 1606 963 J J J Undecided pol 1404 4410 2703 J J Undecided vif 4354 4933 522 J J Undecided vpr 4872 5163 147 J J Undecided 5tat 5143 5354 185 J J Undecided env 5546 8102 1588 J J Undecided 4336329 AF082395 gag 113 1607 963 J J J Undecided pol 1405 4411 2703 J J Undecided vif 4355 4934 522 J J Undecided vpr 4873 5164 147 J J Undecided 5tat 5144 5355 185 J J Undecided env 5547 8109 1588 J J Undecided 5730526 AF119208 env 0 528 323 J J J Undecided 5730530 AF119210 env 0 501 323 J J J Undecided 6006654 AF028326 env 0 387 234 H H H Undecided 7532655 AJ286482 gag 1 616 565 H H H Undecided 7715673 AF120189 pol 1 288 277 H H H Undecided 7767344 AF144856 gag 0 305 203 H H 04_cpx Undecided 7767352 AF144860 gag 0 287 200 J J J Undecided 7767354 AF144861 gag 0 222 163 J J J Undecided 7767372 AF144870 gag 0 328 226 J J J Undecided 8072250 AF260476 env 0 383 315 H H H Undecided 11124722 AJ401041 env 1 2567 1588 J J J Undecided 11124730 AJ401045 env 0 2525 1588 J J J Undecided 11124762 AJ404021 env 0 561 347 K K K Undecided 11124910 AJ404095 env 0 570 347 J J J Undecided 11125518 AJ404239 gag 0 623 573 H H H Undecided 11125520 AJ404240 gag 0 622 572 K K K Undecided 11125595 AJ404273 gag 0 632 573 J J J Undecided 13506432 AY010419 pol 0 296 231 J J 11_cpx Undecided 13506540 AY010473 pol 0 666 611 J J 11_cpx Undecided 13506602 AY010504 pol 0 672 617 J J 11_cpx Undecided 15192275 AY036302 pol 0 297 231 B B 07_BC Undecided 15192371 AY036373 pol 0 297 231 A A A Undecided 15192372 AY036374 pol 0 297 231 A A A Undecided 16902562 AF408479 pol 0 590 535 H H H Undecided 16902564 AF408480 pol 0 590 535 H H H Undecided 16902566 AF408481 pol 0 590 535 H H H Undecided 18253930 AF405186 env 0 401 329 J J J Undecided 18253932 AF405187 env 0 401 329 J J J Undecided 19069748 AJ313394 pol 50 1800 1509 J J 11_cpx Undecided 19069780 AJ313410 pol 51 1827 1531 H H H Undecided 21218198 AF509251 pol 0 609 554 H H H Undecided 21218285 AF509295 pol 0 606 551 H H H Undecided 21552673 AJ318392 env 0 508 345 J J J Undecided 21929248 AF425385 pol 0 961 833 H H H Undecided 21929258 AF425390 pol 0 961 833 J J J Undecided 27475747 AF339008 pol 0 871 802 J J 13_cpx Undecided 28864026 AY204283 env 1 365 239 H H H Undecided 30908577 AY249789 env 0 527 326 J J J Undecided 34555729 AY372170 pol 0 1268 1133 J J J Undecided 45685502 AY494972 env 0 2559 1588 J J J Undecided 46367373 AJ606644 gag 0 283 218 H H H Undecided 46367379 AJ606647 gag 0 286 219 H H H Undecided 48526454 AY626957 pol 0 297 231 J J J Undecided 50346438 AY667654 env 0 366 296 J J J Undecided 50346466 AY667668 env 0 366 296 K K 05_DF Undecided 50402459 AY665494 env 0 342 212 K K K Undecided 50956040 AY672864 gag 0 399 180 J J J Undecided 50956326 AY672881 gag 0 396 180 J J J Undecided 50981484 AY676588 gag 108 559 246 J J J Undecided 52547076 AY610973 ltr 0 330 126 G G G Undecided 52547102 AY610999 ltr 3 545 184 G G 02_AG Undecided 52547107 AY611004 ltr 10 554 202 G G 02_AG Undecided 54792361 AJ630546 gag 0 628 578 H H H Undecided 56121642 AY661753 pol 0 288 277 J J J Undecided 56121652 AY661758 pol 1 288 277 H H H Undecided 56121662 AY661763 pol 0 288 277 J J J Undecided 56121670 AY661767 pol 0 288 277 J J J Undecided 56121710 AY673113 env 0 401 329 J J J Undecided 61741785 AY751076 env 0 1034 702 J J 11_cpx Undecided 62823844 AY924502 env 0 377 309 J J J Undecided 62824004 AY924582 env 2 508 308 J J J Undecided 63095397 AY900747 pol 0 297 231 J J J Undecided 63095399 AY900748 pol 0 296 231 J J J Undecided 63096504 AY901301 pol 0 972 903 J J J Undecided 63096506 AY901302 pol 0 972 903 J J J Undecided 63096520 AY901309 pol 0 999 930 J J J Undecided 73810338 DQ113003 pol 0 1225 1090 H H H Undecided 73810694 DQ113181 pol 0 1220 1085 H H H Undecided 84618504 AM085089 gag 0 615 565 J J J Undecided 84618514 AM085094 gag 0 545 508 H H H Undecided 85662809 AJ877595 env 0 613 359 J J J Undecided 85663156 AJ877770 env 4 655 374 J J J Undecided 85663514 AJ877862 env 0 646 374 J J J Undecided 88193328 AM086500 env 0 489 285 J J J Undecided 88193354 AM086548 env 0 537 320 J J J Undecided 88193364 AM086556 env 0 402 252 H H H Undecided 88853117 AM040986 pol 0 1758 1514 J J J Undecided 88853135 AM040995 pol 0 1755 1514 J J J Undecided 88853227 AM041041 pol 2 1677 1443 H H H Undecided 90822134 DQ443552 pol 0 732 670 H H H Undecided 90822150 DQ443560 pol 0 767 701 J J 11_cpx Undecided 90822188 DQ443579 pol 0 765 699 J J J Undecided

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