Launch prediction server Query precalculated results
Algorithms Prediction server Database query Output description Benchmark results

Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide

Multiple Substitution Correction Algorithm: Jukes-Cantor

All sites that include gaps were deleted.


Gene by Gene Subtype Prediction Summary (Download as an EXCEL file)

NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision
1150893 U43136 env 0 1549 852 A J 11_cpx Undecided
1226092 L76880 env 0 270 163 G K G Undecided
1478056 L39106 pol 1609 4621 2703 02_AG J 11_cpx Undecided
1620232 U61859 env 0 255 163 A J A Undecided
1620236 U61861 env 13 255 156 A H A Undecided
1620244 U61865 env 1 255 163 A J A Undecided
1763505 U76177 env 0 360 235 D J J Undecided
2078242 U88807 env 0 264 163 C J 10_CD Undecided
2276254 X94386 env 11 849 464 B K 06_cpx Undecided
3132800 AF063223 pol 1432 4444 2703 02_AG J 06_cpx Undecided
3132810 AF063224 pol 1433 4445 2703 02_AG J 06_cpx Undecided
3183772 AJ228289 gag 0 340 313 D H D Undecided
3204206 AJ006745 env 0 274 183 D K 10_CD Undecided
3323526 AF049301 env 8 525 360 C J F Undecided
3779261 AF064699 vif 5068 5647 522 06_cpx K 06_cpx Undecided
3859021 AJ003212 pol 0 777 711 B K 04_cpx Undecided
4160175 AJ132200 env 0 462 257 D K D Undecided
5059050 AF119820 ltr 6 632 256 04_cpx K 04_cpx Undecided
5163258 AF125286 pol 0 267 207 H K K Undecided
5730502 AF119196 env 0 521 321 H J H Undecided
5730534 AF119212 env 0 528 323 H J H Undecided
5733940 AF107770 pol 1456 4468 2703 02_AG J 06_cpx Undecided
5738575 AJ245482 pol 12 2866 2540 06_cpx J 06_cpx Undecided
5932462 AF188344 pol 0 691 625 11_cpx J 11_cpx Undecided
6006958 AF028088 pol 0 288 277 D J K Undecided
6409250 AF180668 pol 0 571 516 B J 06_cpx Undecided
6624677 AJ270004 gag 0 622 572 06_cpx H 06_cpx Undecided
7242558 AJ276534 pol 0 663 608 02_AG J H Undecided
7242574 AJ276542 pol 0 663 608 02_AG K H Undecided
7416726 AB034558 vpr 4 291 147 B J 13_cpx Undecided
7452898 AJ251056 pol 1281 4293 2703 02_AG J 06_cpx Undecided
7452908 AJ251057 pol 1278 4287 2701 02_AG J 06_cpx Undecided
7649465 AJ286137 pol 51 1820 1518 02_AG H 06_cpx Undecided
7649467 AJ286138 pol 51 1823 1521 02_AG K H Undecided
7649471 AJ286140 pol 1 1571 1420 02_AG K 06_cpx Undecided
7649473 AJ286141 pol 52 1817 1514 02_AG J 06_cpx Undecided
7657888 AJ286133 pol 1240 4252 2703 02_AG J 06_cpx Undecided
7767260 AF144814 gag 0 370 226 H J 11_cpx Undecided
7767330 AF144849 gag 0 346 226 H J 11_cpx Undecided
7767334 AF144851 gag 0 339 214 H J H Undecided
7767338 AF144853 gag 0 322 219 H J 11_cpx Undecided
7767340 AF144854 gag 0 311 211 H J H Undecided
7767350 AF144859 gag 0 193 118 H J 13_cpx Undecided
8050687 AF247522 pol 1232 2585 1096 B K 05_DF Undecided
8133131 AF268327 pol 0 432 287 11_cpx K K Undecided
8133155 AF268339 pol 0 435 287 11_cpx K K Undecided
8247234 AJ286142 pol 51 1738 1439 J H H Undecided
8925617 AF273163 pol 0 604 549 13_cpx J 13_cpx Undecided
8925619 AF273164 pol 0 575 520 13_cpx J J Undecided
8925649 AF273181 pol 0 606 551 B J 11_cpx Undecided
9368368 AJ288981 nef 8834 9485 246 06_cpx J 06_cpx Undecided
9368378 AJ288982 vif 5057 5636 522 06_cpx H 06_cpx Undecided
9756041 AJ286936 pol 0 1572 1420 02_AG K K Undecided
9756043 AJ286937 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756045 AJ286938 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756047 AJ286939 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756053 AJ286942 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756055 AJ286943 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756057 AJ286944 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756059 AJ286945 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756065 AJ286948 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756067 AJ286949 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756071 AJ286951 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756073 AJ286952 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756075 AJ286953 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756077 AJ286954 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756079 AJ286955 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756081 AJ286956 pol 2 1572 1420 02_AG K 06_cpx Undecided
9756089 AJ286960 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756093 AJ286962 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756101 AJ286966 pol 0 1532 1390 J H H Undecided
9756121 AJ286975 pol 0 1572 1420 F2 K F Undecided
9756139 AJ286984 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756141 AJ286985 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756143 AJ286986 pol 0 1572 1420 02_AG J K Undecided
9756145 AJ286987 pol 0 1572 1420 02_AG J K Undecided
9756149 AJ286989 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756151 AJ286990 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756153 AJ286991 pol 0 1572 1420 02_AG J 04_cpx Undecided
9756155 AJ286992 pol 0 1572 1420 02_AG J K Undecided
9756157 AJ286993 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756159 AJ286994 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756161 AJ286995 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756163 AJ286996 pol 0 1572 1420 02_AG K 02_AG Undecided
9756165 AJ286997 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756167 AJ286998 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756169 AJ286999 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756171 AJ287000 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756173 AJ287001 pol 0 1572 1420 02_AG K K Undecided
9756175 AJ287002 pol 0 1572 1420 02_AG K 04_cpx Undecided
9756177 AJ287003 pol 0 1569 1418 02_AG K 04_cpx Undecided
9756203 AJ287016 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756239 AJ287034 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756241 AJ287035 pol 0 1572 1420 02_AG J 06_cpx Undecided
9756243 AJ287036 pol 0 1572 1420 02_AG J K Undecided
9756245 AJ287037 pol 0 1572 1420 02_AG K 06_cpx Undecided
9756247 AJ287038 pol 0 1572 1420 02_AG K 06_cpx Undecided
9886900 AF212277 pol 1211 2543 1096 02_AG H 06_cpx Undecided
9937112 AF188902 env 0 278 163 A J 10_CD Undecided
10180898 AF252130 gag 1 379 350 A2 H H Undecided

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