Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60228 X04415 pol 1662 4671 2703 A1DK K 06_cpx Undecided 424168 L22083 gag 0 1456 963 A2C H H Undecided 463057 L20587 vpr 5613 5906 147 O G G Undecided vpu 6127 6367 95 K 06_cpx Undecided 469239 L20571 vpr 5588 5890 147 O J 13_cpx Undecided 5tat 5871 6079 185 F F Undecided nef 8891 9518 244 H 06_cpx Undecided 492871 A07116 pol 1662 4671 2703 A1DK K 06_cpx Undecided 927044 L41177 env 0 255 160 J J J Undecided 927045 L41179 gag 0 412 195 J J J Undecided 927046 L41176 env 0 255 160 J J J Undecided 927047 L41178 gag 0 412 195 J J J Undecided 1144365 U33100 env 1 297 181 J J J Undecided 1150893 U43136 env 0 1549 852 A J 11_cpx Undecided 1171183 U43102 env 0 871 504 U J 13_cpx Undecided 1226092 L76880 env 0 270 163 G K G Undecided 1478056 L39106 pol 1609 4621 2703 02_AG J 11_cpx Undecided 1556507 U70276 gag 1 181 128 K 06_cpx Undecided 1620232 U61859 env 0 255 163 A J A Undecided 1620236 U61861 env 13 255 156 A H A Undecided 1620244 U61865 env 1 255 163 A J A Undecided 1667437 U70613 env 0 105 58 J F Undecided 1763505 U76177 env 0 360 235 D J J Undecided 1899119 U86776 gag 173 1658 963 A2C H H Undecided 1899122 U86777 gag 176 1661 963 A2C H 04_cpx Undecided 1899128 U86780 gag 168 1653 963 A2C H H Undecided 2078242 U88807 env 0 264 163 C J 10_CD Undecided 2276254 X94386 env 11 849 464 B K 06_cpx Undecided 2944148 U92049 pol 1280 4292 2703 A1C J 11_cpx Undecided 3132800 AF063223 pol 1432 4444 2703 02_AG J 06_cpx Undecided 3132810 AF063224 pol 1433 4445 2703 02_AG J 06_cpx Undecided 3183772 AJ228289 gag 0 340 313 D H D Undecided 3204206 AJ006745 env 0 274 183 D K 10_CD Undecided 3287076 Y16018 pol 0 87 87 O J 10_CD Undecided 5tat 844 1052 179 H 04_cpx Undecided 3287081 Y16019 pol 0 87 87 O H H Undecided 3287102 Y16020 pol 0 87 87 O H H Undecided 3287107 Y16021 pol 0 87 87 O H H Undecided vpu 1087 1330 95 K 06_cpx Undecided 3287112 Y16022 vpr 561 854 147 O G G Undecided vpu 1077 1315 92 A A Undecided 3287117 Y16023 pol 0 87 87 O H H Undecided vpu 1087 1327 95 K K Undecided 3287122 Y16024 pol 0 87 87 O J 06_cpx Undecided 3287127 Y16025 pol 0 87 87 O H H Undecided 3287132 Y16026 pol 0 87 87 O H H Undecided vpr 561 863 147 J 13_cpx Undecided 3287142 Y16028 pol 0 87 87 O H H Undecided vpu 1066 1330 95 K 06_cpx Undecided 3287147 Y16029 pol 0 87 87 O H H Undecided vpu 1087 1330 95 K 06_cpx Undecided 3287158 Y16030 pol 0 87 87 O H H Undecided vpu 1086 1324 92 K A Undecided 3287163 Y16031 vpu 1085 1321 95 O K 06_cpx Undecided 3288214 AJ228142 env 0 255 163 K K K Undecided 3288388 AJ006022 vpu 5658 5906 95 N G 13_cpx Undecided ltr 8675 9174 256 K J Undecided 3323526 AF049301 env 8 525 360 C J F Undecided 3676481 AF056185 vif 647 1226 522 A1GU J 06_cpx Undecided 3779261 AF064699 vif 5068 5647 522 06_cpx K 06_cpx Undecided 3859021 AJ003212 pol 0 777 711 B K 04_cpx Undecided 4151461 AF096350 env 0 350 283 J J Undecided 4160175 AJ132200 env 0 462 257 D K D Undecided 4336328 AF082394 gag 112 1606 963 J J J Undecided pol 1404 4410 2703 J J Undecided vif 4354 4933 522 J J Undecided vpr 4872 5163 147 J J Undecided 5tat 5143 5354 185 J J Undecided env 5546 8102 1588 J J Undecided 4336329 AF082395 gag 113 1607 963 J J J Undecided pol 1405 4411 2703 J J Undecided vif 4355 4934 522 J J Undecided vpr 4873 5164 147 J J Undecided 5tat 5144 5355 185 J J Undecided env 5547 8109 1588 J J Undecided 4539033 AJ237565 pol 2094 5106 2703 A1DHK K 06_cpx Undecided 4995258 AJ237809 env 0 2412 1581 AJK K 04_cpx Undecided 5059050 AF119820 ltr 6 632 256 04_cpx K 04_cpx Undecided 5163258 AF125286 pol 0 267 207 H K K Undecided 5531651 AF055729 5tat 1337 1548 185 02DO K D Undecided 5668910 AF076474 pol 1447 4456 2703 A1GHU J H Undecided vif 4400 4979 522 J H Undecided 5tat 5189 5400 185 J K Undecided env 5576 8117 1587 K 06_cpx Undecided 5668922 AF076475 pol 1422 4434 2703 F2KU K K Undecided 5tat 5166 5377 185 J 13_cpx Undecided env 5557 8188 1586 K K Undecided 5730502 AF119196 env 0 521 321 H J H Undecided 5730526 AF119208 env 0 528 323 J J J Undecided 5730530 AF119210 env 0 501 323 J J J Undecided 5730534 AF119212 env 0 528 323 H J H Undecided 5733940 AF107770 pol 1456 4468 2703 02_AG J 06_cpx Undecided 5738575 AJ245482 pol 12 2866 2540 06_cpx J 06_cpx Undecided 5763673 AJ239083 pol 1289 4301 2703 02O J 06_cpx Undecided 5932448 AF188337 pol 0 431 387 U K 03_AB Undecided 5932462 AF188344 pol 0 691 625 11_cpx J 11_cpx Undecided 6006654 AF028326 env 0 387 234 H H H Undecided 6006958 AF028088 pol 0 288 277 D J K Undecided 6103511 AF147953 env 0 239 114 O J 13_cpx Undecided 6409250 AF180668 pol 0 571 516 B J 06_cpx Undecided

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