Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60064 X62098 gag 0 196 143 B B B (Unambiguous Nested) 60066 Z11130 gag 0 127 83 B B B (Unambiguous Nested) 60068 Z11134 gag 0 217 160 B B B (Unambiguous Nested) 60069 Z11141 gag 0 225 162 B B B (Unambiguous Nested) 60071 Z11144 gag 0 183 129 B B B (Unambiguous Nested) 60073 Z11145 gag 0 232 169 B B B (Unambiguous Nested) 60075 Z11146 gag 0 231 167 B B B (Unambiguous Nested) 60076 Z11147 gag 0 238 176 F F F (Unambiguous Nested) 60078 Z11148 gag 0 227 169 A A A (Unambiguous Nested) 60079 Z11149 gag 0 207 156 A A A (Unambiguous Nested) 60081 Z11150 gag 0 221 160 B B B (Unambiguous Nested) 60083 Z11131 gag 0 229 165 B B B (Unambiguous Nested) 60085 Z11132 gag 2 232 166 B B B (Unambiguous Nested) 60087 Z11133 gag 0 224 164 G 04_cpx Undecided 60089 Z11135 gag 0 194 140 G 06_cpx Undecided 60091 Z11136 gag 0 225 168 B B B (Unambiguous Nested) 60093 Z11137 gag 0 223 166 B B B (Unambiguous Nested) 60095 Z11138 gag 0 227 166 C C C (Unambiguous Nested) 60097 Z11139 gag 0 182 128 B B B (Unambiguous Nested) 60099 Z11140 gag 0 226 165 C C C (Unambiguous Nested) 60101 Z11142 gag 0 227 166 C C C (Unambiguous Nested) 60103 Z11143 gag 0 230 166 B B B (Unambiguous Nested) 60105 X60442 gag 0 213 156 B B B (Unambiguous Nested) 60107 X60443 gag 0 229 165 B B B (Unambiguous Nested) 60109 X60444 gag 6 224 161 B B B (Unambiguous Nested) 60110 X60445 gag 0 199 145 B B B (Unambiguous Nested) 60111 X60446 gag 0 229 165 B B B (Unambiguous Nested) 60113 X58780 nef 16 637 246 ? B B Undecided ltr 305 637 256 B B Undecided 60140 X58781 5rev 21 93 59 ? D 05_DF Undecided 3rev 94 314 176 D D Undecided env 97 296 90 B B Undecided 60144 X64650 5tat 38 245 181 ? B B B (Unambiguous Nested) 266069 S56177 gag 0 200 126 B 14_BG Undecided 287718 X70627 pol 0 657 595 ? B B Undecided 288663 Z19114 env 0 105 58 B B B (Major agrees Nested with high confidence) 288664 Z18880 env 0 105 58 B B B (Major agrees Nested with high confidence) 288666 Z18881 env 0 105 58 B B B (Major agrees Nested with high confidence) 288668 Z18882 env 0 108 58 B B B (Major agrees Nested with high confidence) 288670 Z19119 env 0 105 58 B B B (Major agrees Nested with high confidence) 288671 Z15174 env 0 105 58 B B B (Major agrees Nested with high confidence) 288673 Z15175 env 0 105 58 B B B (Major agrees Nested with high confidence) 288697 Z15161 env 0 105 58 B B B (Major agrees Nested with high confidence) 288699 Z15178 env 0 105 58 B B B (Major agrees Nested with high confidence) 288701 Z19116 env 0 105 58 B B B (Major agrees Nested with high confidence) 288712 Z15162 env 0 105 58 B B B (Major agrees Nested with high confidence) 288714 Z15188 env 0 105 58 B B B (Major agrees Nested with high confidence) 288719 Z15189 env 0 105 58 B B B (Major agrees Nested with high confidence) 288742 Z15186 env 0 105 58 B B B (Major agrees Nested with high confidence) 288758 Z15192 env 0 105 58 B B B (Major agrees Nested with high confidence) 288766 Z15169 env 0 105 58 B B B (Major agrees Nested with high confidence) 288768 Z15167 env 0 105 58 B B B (Major agrees Nested with high confidence) 288772 Z18879 env 0 105 58 B B B (Major agrees Nested with high confidence) 288774 Z15168 env 0 105 58 B B B (Major agrees Nested with high confidence) 288779 Z15185 env 0 105 58 B B B (Major agrees Nested with high confidence) 288783 Z15166 env 0 105 58 B B B (Major agrees Nested with high confidence) 288794 Z15163 env 0 105 58 B B B (Major agrees Nested with high confidence) 288797 Z19117 env 0 108 58 B B B (Major agrees Nested with high confidence) 288800 Z15170 env 0 105 58 B B B (Major agrees Nested with high confidence) 288802 Z19118 env 0 105 58 B B B (Major agrees Nested with high confidence) 288803 Z15179 env 0 102 57 B B B (Major agrees Nested with high confidence) 288805 Z15190 env 0 105 58 B B B (Major agrees Nested with high confidence) 288807 Z15183 env 0 105 58 B B B (Major agrees Nested with high confidence) 288809 Z15173 env 0 105 58 B B B (Major agrees Nested with high confidence) 288826 Z15181 env 0 102 57 B 10_CD Undecided 288829 Z15164 env 0 105 58 B B B (Major agrees Nested with high confidence) 288839 Z15177 env 0 102 57 B 10_CD Undecided 288841 Z15191 env 0 105 58 B B B (Major agrees Nested with high confidence) 288845 Z15165 env 0 105 58 B B B (Major agrees Nested with high confidence) 288851 Z19113 env 0 105 58 B B B (Major agrees Nested with high confidence) 288856 Z15187 env 0 105 58 B B B (Major agrees Nested with high confidence) 288858 Z15184 env 0 105 58 B B B (Major agrees Nested with high confidence) 288860 Z19112 env 0 105 58 B B B (Major agrees Nested with high confidence) 288861 Z19111 env 3 105 55 B B B (Major agrees Nested with high confidence) 288862 Z19115 env 0 105 58 B B B (Major agrees Nested with high confidence) 290969 L16594 env 0 105 58 B C Undecided env 0 105 58 B C Undecided 290971 L16620 env 0 105 58 B C Undecided env 0 105 58 B C Undecided 290975 L16614 env 0 105 58 B B B (Major agrees Nested with high confidence) 290977 L16595 env 0 105 58 B B B (Major agrees Nested with high confidence) 290979 L16618 env 0 105 58 C C C (Major agrees Nested with high confidence) 290981 L16619 env 0 105 58 B C Undecided env 0 105 58 B C Undecided 291092 L13508 gag 0 343 238 B B B (Unambiguous Nested) 291093 L13517 gag 0 343 238 B B B (Unambiguous Nested) 291094 L13518 gag 0 343 238 B B B (Unambiguous Nested) 291095 L13519 gag 0 343 238 B B B (Unambiguous Nested) 291096 L13520 gag 0 343 238 B B B (Unambiguous Nested) 291097 L13521 gag 0 343 238 B B B (Unambiguous Nested) 291098 L13522 gag 0 343 238 B B B (Unambiguous Nested) 291099 L13509 gag 0 343 238 B B B (Unambiguous Nested) 291100 L13510 gag 0 343 238 B B B (Unambiguous Nested) 291101 L13511 gag 0 343 238 B B B (Unambiguous Nested) 291102 L13512 gag 0 343 238 B B B (Unambiguous Nested) 291103 L13513 gag 0 343 238 B B B (Unambiguous Nested) 291104 L13514 gag 5 343 238 B B B (Unambiguous Nested) 291105 L13515 gag 0 343 238 B B B (Unambiguous Nested) 291106 L13516 gag 0 343 238 B B B (Unambiguous Nested) 291167 L13569 gag 0 343 238 B B B (Unambiguous Nested)

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