Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60228 X04415 gag 349 1867 963 A1DK A 03_AB Undecided pol 1662 4671 2703 K 06_cpx Undecided pol 1662 4671 2703 K 06_cpx Undecided vif 4615 5194 522 G A A (Unambiguous Nested) vpr 5133 5424 147 D D D (Unambiguous Nested) 5tat 5404 5615 185 D D D (Major agrees Nested with high confidence) vpu 5648 5881 95 D D D (Major agrees Nested with high confidence) env 5798 8378 1587 D 10_CD Undecided nef 8379 9009 246 A 02_AG Undecided ltr 8677 9229 256 H H Undecided 305498 L11482 env 6 249 128 U D D D (Unambiguous Nested) 305499 L11483 env 8 285 159 U D D D (Unambiguous Nested) 305544 L11508 env 0 270 163 U A A A (Major agrees Nested with high confidence) 305546 L11509 env 0 270 163 U A A A (Major agrees Nested with high confidence) 305548 L11510 env 0 283 164 U A A A (Major agrees Nested with high confidence) 305555 L11515 env 0 234 160 U A 11_cpx Undecided 305557 L11514 env 1 240 162 U A 11_cpx Undecided 305840 L11751 gag 0 1458 962 BF1 F F F (Major agrees Nested with high confidence) 305896 L11756 gag 0 1477 963 AD H 06_cpx Undecided 305914 L11766 gag 0 1459 963 AD A 09_cpx A (Highly confident Major) 305964 L11769 gag 0 1477 963 AD A A A (Unambiguous Nested) 305978 L11776 gag 0 1483 963 ACFG A 03_AB Undecided 306133 L11790 gag 0 1465 963 AGHU A 03_AB Undecided 306137 L11792 gag 0 1471 963 GH H H Undecided 326272 M91856 env 0 276 163 BF1 F 05_DF Undecided 326274 M91855 env 0 276 163 BF1 F 05_DF Undecided 326276 M91853 env 0 276 163 BF1 F 05_DF Undecided 326278 M91851 env 0 276 163 BF1 F 05_DF Undecided 326280 M91854 env 0 276 163 BF1 F 05_DF Undecided 326282 M91852 env 0 276 163 BF1 F 05_DF Undecided 326284 M91850 env 0 276 163 BF1 F 05_DF Undecided 326286 M91849 env 0 276 163 BF1 F F F (Major agrees Nested with high confidence) 326288 M91847 env 0 276 163 BF1 F 05_DF Undecided 326290 M91846 env 0 276 163 BF1 F 05_DF Undecided 326292 M91845 env 0 276 163 BF1 F 05_DF Undecided 326294 M91843 env 0 276 163 BF1 F 05_DF Undecided 326296 M91841 env 0 276 163 BF1 F 05_DF Undecided 326298 M91844 env 0 276 163 BF1 F 05_DF Undecided 326300 M91842 env 0 276 163 BF1 F 05_DF Undecided 326302 M91840 env 0 276 163 BF1 F 05_DF Undecided 327340 M73473 pol 2 177 77 01G G G G (Major agrees Nested with high confidence) 327348 M73477 pol 2 180 77 AG A A A (Major agrees Nested with high confidence) 327350 M73472 pol 2 177 77 AG 01_AE 01_AE Undecided 327356 M73480 pol 2 180 77 AG A A A (Major agrees Nested with high confidence) 329387 K03347 vpu 0 140 51 U C C C (Major agrees Nested with high confidence) env 57 2602 1585 H 04_cpx Undecided nef 2603 2709 50 C 02_AG Undecided 329392 M15896 vpu 0 179 70 A1GU G 02_AG Undecided env 96 2667 1588 A A A (Unambiguous Nested) nef 2668 3296 246 01_AE 13_cpx Undecided ltr 2957 3457 256 01_AE 11_cpx Undecided 401751 L14570 env 0 2424 1574 01B B 15_01B B (Highly confident Major) 424168 L22083 gag 0 1456 963 A2C H H Undecided gag 0 1456 963 H H Undecided 424169 L22084 env 0 1710 1046 BF1 F F F (Unambiguous Nested) 437347 L22942 env 0 2580 1588 AD D 10_CD Undecided 437357 L22952 env 0 2565 1588 AG A A A (Major agrees Nested with high confidence) 437358 L22953 env 0 2604 1588 GH G G G (Unambiguous Nested) 437360 L22955 5tat 86 297 185 A2C A A A (Major agrees Nested with high confidence) vpu 340 573 95 A A A (Unambiguous Nested) env 490 3037 1588 A 16_A2D Undecided nef 3038 3303 94 A A A (Major agrees Nested with high confidence) 450599 L22947 vpu 18 251 95 A1D 01_AE 01_AE 01_AE (Unambiguous Nested) env 168 2724 1588 D D D (Unambiguous Nested) nef 2725 3022 107 D D D (Unambiguous Nested) 463057 L20587 vpr 5613 5906 147 O G G Undecided vpr 5613 5906 147 G G Undecided 5tat 5887 6092 182 D D Undecided vpu 6127 6367 95 K 06_cpx Undecided vpu 6127 6367 95 K 06_cpx Undecided nef 8865 9454 222 G 06_cpx Undecided 469239 L20571 vpr 5588 5890 147 O J 13_cpx Undecided vpr 5588 5890 147 J 13_cpx Undecided 5tat 5871 6079 185 F F Undecided 5tat 5871 6079 185 F F Undecided nef 8891 9518 244 H 06_cpx Undecided nef 8891 9518 244 H 06_cpx Undecided 478894 U08631 env 0 275 163 AC A A A (Unambiguous Nested) 478896 U08632 env 0 275 163 AC A A A (Unambiguous Nested) 487220 U08709 env 0 273 163 BC B B B (Unambiguous Nested) 487349 U08953 env 0 282 168 BF F 12_BF Undecided env 0 282 168 F 12_BF Undecided 487351 U08954 env 0 282 168 BF F F F (Major agrees Nested with high confidence) 487353 U08955 env 7 289 168 BF F 12_BF Undecided 487355 U08956 env 1 282 168 BF B 12_BF Undecided 487357 U08957 env 1 282 168 BF B 12_BF Undecided 487359 U08958 env 0 282 168 BF F 12_BF Undecided 487361 U08959 env 0 282 168 BF F 12_BF Undecided 487363 U08960 env 0 282 168 BF D 05_DF Undecided 487364 U08962 env 0 282 168 BF F 12_BF Undecided 487366 U08963 env 7 289 168 BF F F F (Major agrees Nested with high confidence) 487367 U08964 env 8 289 168 BF B F Undecided 487369 U08965 env 0 282 168 BF F 12_BF Undecided 487371 U08966 env 7 289 168 BF F 12_BF Undecided 487373 U08967 env 7 289 168 BF F 12_BF Undecided 487375 U08968 env 7 289 168 BF F 12_BF Undecided 487377 U08969 env 7 289 168 BF F 12_BF Undecided 487379 U08970 env 7 289 168 BF F 12_BF Undecided 487381 U08971 env 0 282 168 BF F 12_BF Undecided 487386 U08974 env 0 1183 689 BF1 F F F (Unambiguous Nested)

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