Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary (Download as an EXCEL file) NCBI GI ACCESSION Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 60115 X63040 nef 13 628 246 B B B B (Unambiguous Nested) ltr 296 628 256 B B B (Unambiguous Nested) 60117 X63041 nef 13 631 246 B B B B (Unambiguous Nested) ltr 299 631 256 B B B (Unambiguous Nested) 60119 X63042 nef 13 631 246 B B B B (Unambiguous Nested) ltr 299 631 256 B B B (Unambiguous Nested) 60121 X63043 nef 13 613 246 B B B B (Unambiguous Nested) ltr 281 613 256 B B B (Unambiguous Nested) 60123 X63044 nef 13 628 246 B B B B (Unambiguous Nested) ltr 296 628 256 B B B (Unambiguous Nested) 60125 X64745 nef 11 644 246 B B B B (Unambiguous Nested) ltr 312 662 256 B B B (Major agrees Nested with high confidence) 60126 X64746 nef 11 644 246 B B B B (Unambiguous Nested) ltr 312 662 256 B B B (Unambiguous Nested) 60127 X64747 nef 11 632 246 B B B B (Unambiguous Nested) ltr 300 650 256 B B B (Unambiguous Nested) 60128 X64748 nef 11 635 246 B B B B (Unambiguous Nested) ltr 303 653 256 B B B (Unambiguous Nested) 60129 X64749 nef 11 635 246 B B B B (Unambiguous Nested) ltr 303 653 256 B B B (Unambiguous Nested) 60130 X64750 nef 11 638 246 B B B B (Unambiguous Nested) ltr 306 656 256 B B B (Unambiguous Nested) 60131 X64751 nef 11 638 246 B B B B (Unambiguous Nested) ltr 306 656 256 B B B (Unambiguous Nested) 60132 X64752 nef 11 640 246 B B B B (Unambiguous Nested) ltr 300 658 256 B B B (Unambiguous Nested) 60133 X64753 nef 11 637 246 B B B B (Unambiguous Nested) ltr 297 655 256 B B B (Unambiguous Nested) 60134 X64754 nef 11 632 246 B B B B (Unambiguous Nested) ltr 300 650 256 B B B (Unambiguous Nested) 60135 X64755 nef 11 632 246 B B B B (Unambiguous Nested) ltr 300 650 256 B B B (Unambiguous Nested) 60136 X64756 nef 11 181 64 B B B B (Major agrees Nested with high confidence) 60137 X64757 nef 11 187 64 B B B B (Major agrees Nested with high confidence) 60138 X64758 nef 11 191 64 B B B B (Major agrees Nested with high confidence) 60139 Z11757 vif 108 185 71 B B B B (Major agrees Nested with high confidence) 5rev 182 248 54 B B B (Unambiguous Nested) 5tat 182 248 60 B B B (Unambiguous Nested) 3tat 251 342 91 B B B (Unambiguous Nested) 3rev 251 344 93 B B B (Unambiguous Nested) 60142 Z11756 5tat 62 123 55 B B B B (Unambiguous Nested) ltr 129 407 185 B B B (Unambiguous Nested) nef 130 378 89 B B B (Unambiguous Nested) 60175 X61357 env 0 1074 737 B B B B (Unambiguous Nested) 60177 X61358 env 0 1074 737 B B B B (Unambiguous Nested) 60179 X61355 env 0 1074 737 B B B B (Unambiguous Nested) 60181 X61356 env 0 1074 737 B B B B (Unambiguous Nested) 60182 X61359 env 0 1077 737 B B B B (Unambiguous Nested) 60184 X61351 env 0 1077 737 B B B B (Unambiguous Nested) 60186 X61352 env 0 1077 737 B B B B (Unambiguous Nested) 60188 X61353 env 0 1074 737 B B B B (Unambiguous Nested) 60190 X61354 env 0 1074 737 B B B B (Unambiguous Nested) 60192 Z11530 gag 829 2332 963 B B B B (Unambiguous Nested) pol 2124 5136 2703 B B B (Unambiguous Nested) vif 5080 5659 522 B B B (Unambiguous Nested) vpr 5598 5890 147 B B B (Unambiguous Nested) 5tat 5870 6081 185 B B B (Unambiguous Nested) vpu 6111 6347 95 B B B (Major agrees Nested with high confidence) env 6261 8817 1587 B B B (Unambiguous Nested) nef 8818 9439 246 B B B (Unambiguous Nested) ltr 9107 9777 256 B B B (Unambiguous Nested) 60204 X57446 env 0 636 434 B B B B (Unambiguous Nested) 60208 X57449 env 0 874 506 B B B B (Unambiguous Nested) 60212 X57447 env 0 659 452 B B B B (Unambiguous Nested) 60213 X57450 env 0 875 507 B B B B (Unambiguous Nested) 60214 X57460 env 12 492 280 B B B B (Unambiguous Nested) 60216 X57461 env 0 670 368 B B B B (Unambiguous Nested) 60223 X57451 env 0 872 506 B B B B (Unambiguous Nested) 60225 X57462 env 0 209 112 B B B B (Unambiguous Nested) nef 210 831 246 B B B (Unambiguous Nested) ltr 499 1021 256 B B B (Unambiguous Nested) 60226 X57463 env 0 209 112 B B B B (Unambiguous Nested) nef 210 794 221 B B B (Unambiguous Nested) ltr 462 985 256 B B B (Unambiguous Nested) 60227 X57464 env 0 209 112 B B B B (Unambiguous Nested) nef 210 831 246 B B B (Unambiguous Nested) ltr 499 1022 256 B B B (Unambiguous Nested) 60236 X63045 nef 13 628 246 B B B B (Unambiguous Nested) ltr 296 628 256 B B B (Unambiguous Nested) 60238 Z19524 env 1 1493 878 D D D D (Unambiguous Nested) 60240 Z19525 env 0 1493 878 D D D D (Unambiguous Nested) 60242 Z19526 env 0 1493 878 D D D D (Unambiguous Nested) 60244 Z19533 env 1 1487 878 D D D D (Unambiguous Nested) 60246 Z19527 env 1 1499 879 D D D D (Unambiguous Nested) 60248 Z19528 env 0 1493 878 D D D D (Unambiguous Nested) 60250 Z19529 env 0 1493 878 D D D D (Unambiguous Nested) 60252 Z19530 env 1 1499 879 D D D D (Unambiguous Nested) 60254 Z19531 env 0 1493 878 D D D D (Unambiguous Nested) 61569 X01762 gag 786 2324 963 B B B B (Unambiguous Nested) pol 2080 5128 2703 B B B (Unambiguous Nested) vif 5072 5651 522 B B B (Unambiguous Nested) vpr 5590 5882 147 B B B (Unambiguous Nested) 5tat 5862 6073 185 B B B (Unambiguous Nested) vpu 6103 6339 95 B B B (Major agrees Nested with high confidence) env 6253 8824 1587 B B B (Unambiguous Nested) nef 8825 9446 246 B B B (Unambiguous Nested) ltr 9114 9744 256 B B B (Unambiguous Nested) 221474 D10112 ltr 1 632 256 B B B B (Unambiguous Nested) gag 791 2294 963 B B B (Unambiguous Nested) pol 2086 5098 2703 B B B (Unambiguous Nested)

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