Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Sequence Description: (Link to NCBI GenBank) Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision pol 0 288 222 J F Undecided Subtype Prediction for Associated Protein Sequences NCBI GI ACCESSION Gene Start Stop Length Major Subtype Nested Analysis Final Decision 116272722 ABJ91694 pol 0 96 76 J J Undecided Detailed result for pol (major) Outlierness: 1.44986 (all), 3.4e38 (group) Subtype Posterior Probability 01_AE 3.92004e-17 A 0.00000327277 B 0.00785833 C 1.54e-25 D 0.000000031696 F 0.0323549 G 0.000000000372242 H 0.000000048648 J 0.959783 K 0.00000000000477958 Cross-Validation of Discriminant Models Miss-Classification Rate: 21 / 735 at 10 Dimensional MDS Predicted Objective 01_AE A B C D F G H K 01_AE 57 0 0 0 0 0 0 0 0 A 6 53 0 0 0 0 0 0 0 B 0 0 159 0 6 3 0 0 0 C 0 0 0 370 0 0 0 0 1 D 0 3 0 0 43 0 0 0 0 F 0 0 0 0 1 11 0 0 0 G 0 0 0 0 0 0 16 0 0 H 0 0 0 0 0 0 0 3 0 J 0 0 0 0 0 0 0 0 0 K 0 0 0 0 0 0 0 0 2 Download Multiple Alignment Distance Matrix GGobi XML Plot in the First 3 Principal Coordinates Detailed result for pol (nested) Outlierness: 5.00301 (all), 8.16391 (group) Subtype Posterior Probability 05_DF 0.000000904354 06_cpx 2.77408e-20 11_cpx 0 12_BF 0.00000357501 13_cpx 0 F 0.999996 J 3.04138e-40 Cross-Validation of Discriminant Models Miss-Classification Rate: 8 / 43 at 10 Dimensional MDS Predicted Objective 05_DF 06_cpx 11_cpx 12_BF 13_cpx F 05_DF 3 0 0 0 0 0 06_cpx 0 5 0 0 0 0 11_cpx 0 0 10 0 0 0 12_BF 0 0 0 7 0 2 13_cpx 0 0 0 0 3 0 F 0 0 0 5 0 7 J 0 0 0 0 0 0 Download Multiple Alignment Distance Matrix GGobi XML Plot in the First 3 Principal Coordinates