Launch prediction server Query precalculated results
Algorithms Prediction server Database query Output description Benchmark results

Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide

Sequence Description: (Link to NCBI GenBank)

Multiple Substitution Correction Algorithm: Jukes-Cantor

All sites that include gaps were deleted.


Gene by Gene Subtype Prediction Summary

Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision
pol 0 623 566 K 04_cpx Undecided


Subtype Prediction for Associated Protein Sequences

NCBI GI ACCESSION Gene Start Stop Length Major Subtype Nested Analysis Final Decision
134146474 ABO63492 pol 0 209 195 G 02_AG Undecided


Detailed result for pol (major) Outlierness: 0.694926 (all), 10.6462 (group)
Subtype Posterior Probability
01_AE 9.79941e-23
A 2.35782e-23
B 0.000117811
C 7.15285e-26
D 0.000000000000531201
F 0.00101751
G 9.28842e-23
H 0.0000000000524617
J 0.0000000000886306
K 0.998865

Cross-Validation of Discriminant Models
Miss-Classification Rate: 4 / 735 at 10 Dimensional MDS
         Predicted
Objective 01_AE   A   B   C   D   F   G   H   K
    01_AE    57   0   0   0   0   0   0   0   0
    A         2  56   0   1   0   0   0   0   0
    B         0   0 168   0   0   0   0   0   0
    C         0   0   0 371   0   0   0   0   0
    D         0   0   0   0  46   0   0   0   0
    F         0   0   0   0   0  12   0   0   0
    G         0   0   0   0   0   0  16   0   0
    H         0   0   0   0   0   0   0   3   0
    J         0   0   0   0   0   0   0   0   0
    K         0   0   0   0   0   0   0   0   2

Download Multiple Alignment Distance Matrix GGobi XML

Plot in the First 3 Principal Coordinates


Detailed result for pol (nested) Outlierness: 1.77974 (all), 9.49714 (group)
Subtype Posterior Probability
04_cpx 1
06_cpx 1.3639e-28
K 0

Cross-Validation of Discriminant Models
Miss-Classification Rate: 6 / 10 at 8 Dimensional MDS
         Predicted
Objective 04_cpx 06_cpx K
   04_cpx      2      1 0
   06_cpx      1      1 3
   K           0      1 1

Download Multiple Alignment Distance Matrix GGobi XML

Plot in the First 3 Principal Coordinates


Copyrighted by Bio-Data Mining Lab, Department of Bioinformatics and Life Sciences, Soongsil University, Seoul, Korea