Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Sequence Description: (Link to NCBI GenBank) Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 5tat 0 144 124 J J Undecided Subtype Prediction for Associated Protein Sequences NCBI GI ACCESSION Gene Start Stop Length Major Subtype Nested Analysis Final Decision 37693956 AAP33761 tat 0 86 79 B B Undecided Detailed result for 5tat (major) Outlierness: 3.54814 (all), 3.4e38 (group) Subtype Posterior Probability 01_AE 7.82137e-17 A 0.0000000278668 B 3.61239e-23 C 0.0000000000229739 D 6.39128e-22 F 0.0000000000000811802 G 5.63718e-22 H 0.00054839 J 0.999327 K 0.000124537 Cross-Validation of Discriminant Models Miss-Classification Rate: 21 / 659 at 10 Dimensional MDS Predicted Objective 01_AE A B C D F G H K 01_AE 51 0 0 0 0 0 2 0 0 A 6 52 1 0 0 1 1 1 1 B 0 0 159 0 0 0 0 0 0 C 0 0 0 307 0 0 0 0 0 D 0 0 1 0 42 0 0 1 0 F 0 0 0 0 2 9 0 1 0 G 0 0 0 0 0 0 15 0 0 H 0 0 0 0 0 0 0 3 0 J 0 0 0 0 0 0 0 0 0 K 0 1 0 0 0 0 0 1 0 Download Multiple Alignment Distance Matrix GGobi XML Plot in the First 3 Principal Coordinates Detailed result for 5tat (nested) Outlierness: 10.4722 (all), 3.4e38 (group) Subtype Posterior Probability 06_cpx 0.000000356968 11_cpx 2.74671e-20 13_cpx 1.43049e-20 J 1 Cross-Validation of Discriminant Models Miss-Classification Rate: 2 / 19 at 10 Dimensional MDS Predicted Objective 06_cpx 11_cpx 13_cpx 06_cpx 6 0 0 11_cpx 1 8 0 13_cpx 0 0 3 J 0 0 0 Download Multiple Alignment Distance Matrix GGobi XML Plot in the First 3 Principal Coordinates