Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide Sequence Description: (Link to NCBI GenBank) Multiple Substitution Correction Algorithm: Jukes-Cantor All sites that include gaps were deleted. Gene by Gene Subtype Prediction Summary Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision 5tat 0 144 124 H H Undecided Detailed result for 5tat (major) Outlierness: 3.0225 (all), 44.5707 (group) Subtype Posterior Probability 01_AE 5.21573e-18 A 0.000000149545 B 6.30343e-26 C 0.000000000247305 D 0.00000000000000209607 F 0.000000000839283 G 1.92049e-19 H 0.999732 J 0.0000174857 K 0.000250418 Cross-Validation of Discriminant Models Miss-Classification Rate: 19 / 659 at 10 Dimensional MDS Predicted Objective 01_AE A B C D F G H J K 01_AE 52 0 0 0 0 0 1 0 0 0 A 6 52 1 0 0 1 1 1 0 1 B 0 0 159 0 0 0 0 0 0 0 C 0 0 0 307 0 0 0 0 0 0 D 0 0 1 0 43 0 0 0 0 0 F 0 0 0 0 2 9 0 1 0 0 G 0 0 0 0 0 0 15 0 0 0 H 0 0 0 0 0 0 0 3 0 0 J 0 0 0 0 0 0 0 0 0 0 K 0 1 0 0 0 0 0 0 1 0 Download Multiple Alignment Distance Matrix GGobi XML Plot in the First 3 Principal Coordinates Detailed result for 5tat (nested) Outlierness: 16.7178 (all), 13.4961 (group) Subtype Posterior Probability 04_cpx 0.00179868 H 0.998201 Cross-Validation of Discriminant Models Miss-Classification Rate: 2 / 6 at 4 Dimensional MDS Predicted Objective 04_cpx H 04_cpx 2 1 H 1 2 Download Multiple Alignment Distance Matrix GGobi XML Plot in the First 3 Principal Coordinates