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Virus: HIV-1 / Sequence Type: Nucleotide
Sequence Description:
(Link to NCBI GenBank)
Multiple Substitution Correction Algorithm: Jukes-Cantor
All sites that include gaps were deleted.
Gene by Gene Subtype Prediction Summary
| Gene |
Start |
Stop |
Length |
LANL Subtype |
Major Subtype |
Nested Analysis |
Final Decision |
| pol |
2 |
138 |
96 |
? |
H |
H |
Undecided |
| Detailed result for pol (major) |
Outlierness: 2.9523 (all), 14.6975 (group) |
|
| Subtype |
Posterior Probability |
| 01_AE |
0.000000000129901 |
| A |
0.000951707 |
| B |
0.00000599525 |
| C |
0.00014594 |
| D |
0.0000000374449 |
| F |
0.000776737 |
| G |
0.0000114213 |
| H |
0.998108 |
| J |
4.08137e-24 |
| K |
0.0000000014461 |
|
| Cross-Validation of Discriminant Models |
| Miss-Classification Rate: 67 / 735 at 10 Dimensional MDS |
Predicted
Objective 01_AE A B C D F G H K
01_AE 52 0 0 5 0 0 0 0 0
A 6 48 0 3 0 0 2 0 0
B 0 0 151 0 14 3 0 0 0
C 5 2 0 363 0 0 0 1 0
D 0 1 7 0 37 0 0 0 1
F 0 0 1 2 0 9 0 0 0
G 0 1 0 8 0 0 7 0 0
H 0 0 0 2 0 0 0 1 0
J 0 0 0 0 0 0 0 0 0
K 0 0 0 2 0 0 0 0 0
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| Plot in the First 3 Principal Coordinates |
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| Detailed result for pol (nested) |
Outlierness: 1999.08 (all), 11.2038 (group) |
|
| Subtype |
Posterior Probability |
| 04_cpx |
0 |
| H |
1 |
|
| Cross-Validation of Discriminant Models |
| Miss-Classification Rate: 2 / 6 at 4 Dimensional MDS |
Predicted
Objective 04_cpx H
04_cpx 2 1
H 1 2
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| Plot in the First 3 Principal Coordinates |
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