Launch prediction server Query precalculated results
Algorithms Prediction server Database query Output description Benchmark results

Retrieval from the Database of Pre-calcuated Genotyping/Subtyping Results

Virus: HIV-1 / Sequence Type: Nucleotide

Sequence Description: (Link to NCBI GenBank)

Multiple Substitution Correction Algorithm: Jukes-Cantor

All sites that include gaps were deleted.


Gene by Gene Subtype Prediction Summary

Gene Start Stop Length LANL Subtype Major Subtype Nested Analysis Final Decision
pol 1 619 560 K 04_cpx Undecided


Subtype Prediction for Associated Protein Sequences

NCBI GI ACCESSION Gene Start Stop Length Major Subtype Nested Analysis Final Decision
134146694 ABO63602 pol 0 206 192 G 04_cpx Undecided


Detailed result for pol (major) Outlierness: 0.613033 (all), 15.2572 (group)
Subtype Posterior Probability
01_AE 1.38383e-16
A 0.00000000000000743955
B 0.0000000000336511
C 1.13837e-20
D 5.96036e-21
F 0.075243
G 1.72292e-26
H 0.000000184831
J 7.26339e-18
K 0.924757

Cross-Validation of Discriminant Models
Miss-Classification Rate: 4 / 735 at 10 Dimensional MDS
         Predicted
Objective 01_AE   A   B   C   D   F   G   H   K
    01_AE    57   0   0   0   0   0   0   0   0
    A         2  56   0   1   0   0   0   0   0
    B         0   0 168   0   0   0   0   0   0
    C         0   0   0 371   0   0   0   0   0
    D         0   0   0   0  46   0   0   0   0
    F         0   0   0   0   0  12   0   0   0
    G         0   0   0   0   0   0  16   0   0
    H         0   0   0   0   0   0   0   3   0
    J         0   0   0   0   0   0   0   0   0
    K         0   0   0   0   0   0   0   0   2

Download Multiple Alignment Distance Matrix GGobi XML

Plot in the First 3 Principal Coordinates


Detailed result for pol (nested) Outlierness: 1.16056 (all), 6.32775 (group)
Subtype Posterior Probability
04_cpx 1
05_DF 0
06_cpx 0
12_BF 0
F 5.92284e-40
K 0

Cross-Validation of Discriminant Models
Miss-Classification Rate: 0 / 34 at 10 Dimensional MDS
         Predicted
Objective 04_cpx 05_DF 06_cpx 12_BF  F  K
   04_cpx      3     0      0     0  0  0
   05_DF       0     3      0     0  0  0
   06_cpx      0     0      5     0  0  0
   12_BF       0     0      0     9  0  0
   F           0     0      0     0 12  0
   K           0     0      0     0  0  2

Download Multiple Alignment Distance Matrix GGobi XML

Plot in the First 3 Principal Coordinates


Copyrighted by Bio-Data Mining Lab, Department of Bioinformatics and Life Sciences, Soongsil University, Seoul, Korea